BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925686

Length=269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24332.1 | Symbols:  | other RNA | chr3:8830336-8831838 REVE...   248    2e-65
  AT3G24330.1 | Symbols:  | O-Glycosyl hydrolases family 17 prote...   248    2e-65


> AT3G24332.1 | Symbols:  | other RNA | chr3:8830336-8831838 REVERSE 
LENGTH=1402
Length=1402

 Score =  248 bits (134),  Expect = 2e-65
 Identities = 171/187 (91%), Gaps = 9/187 (5%)
 Strand=Plus/Minus

Query  85   TACACAGCTCTCATCAACATCCAACGAGCATTAGAGGAAGCTGATCTTAAAAATGCT-AA  143
            ||| ||||||| |||||||||||||||||| |||||||||||||||| ||||||| | ||
Sbjct  957  TAC-CAGCTCTTATCAACATCCAACGAGCACTAGAGGAAGCTGATCTGAAAAATG-TGAA  900

Query  144  AGTCACTGTTCCTTTCAATGCAGATATCTATTTTTCGCCTGAAGGGAACCCTGTTCCATC  203
            |||||||||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||
Sbjct  899  AGTCACTGTTCCTTTCAACGCAGACATCTATTTTTCCCCTGAAGCGAACCCTGTTCCATC  840

Query  204  AGCTGGAGACTTTAAG-CCTGAGCTAATTAAGGGATGCAACGATTGAGATAATCAATTTC  262
            ||||||||||||| || |||||||    ||||||||||||||||||||||||||||||||
Sbjct  839  AGCTGGAGACTTT-AGACCTGAGC----TAAGGGATGCAACGATTGAGATAATCAATTTC  785

Query  263  TTGTATT  269
            |||||||
Sbjct  784  TTGTATT  778


> AT3G24330.1 | Symbols:  | O-Glycosyl hydrolases family 17 protein 
| chr3:8830336-8831838 FORWARD LENGTH=1503
Length=1503

 Score =  248 bits (134),  Expect = 2e-65
 Identities = 171/187 (91%), Gaps = 9/187 (5%)
 Strand=Plus/Plus

Query  85   TACACAGCTCTCATCAACATCCAACGAGCATTAGAGGAAGCTGATCTTAAAAATGCT-AA  143
            ||| ||||||| |||||||||||||||||| |||||||||||||||| ||||||| | ||
Sbjct  446  TAC-CAGCTCTTATCAACATCCAACGAGCACTAGAGGAAGCTGATCTGAAAAATG-TGAA  503

Query  144  AGTCACTGTTCCTTTCAATGCAGATATCTATTTTTCGCCTGAAGGGAACCCTGTTCCATC  203
            |||||||||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||
Sbjct  504  AGTCACTGTTCCTTTCAACGCAGACATCTATTTTTCCCCTGAAGCGAACCCTGTTCCATC  563

Query  204  AGCTGGAGACTTTAAG-CCTGAGCTAATTAAGGGATGCAACGATTGAGATAATCAATTTC  262
            ||||||||||||| || |||||||    ||||||||||||||||||||||||||||||||
Sbjct  564  AGCTGGAGACTTT-AGACCTGAGC----TAAGGGATGCAACGATTGAGATAATCAATTTC  618

Query  263  TTGTATT  269
            |||||||
Sbjct  619  TTGTATT  625



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12315598505


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5