BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925692
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66520.1 | Symbols: pde194 | formyltransferase, putative | c... 1738 0.0
AT3G31005.1 | Symbols: | Pseudogene of AT1G66520; PDE194 (PIGM... 387 2e-106
> AT1G66520.1 | Symbols: pde194 | formyltransferase, putative |
chr1:24816128-24818744 REVERSE LENGTH=1321
Length=1321
Score = 1738 bits (941), Expect = 0.0
Identities = 1051/1106 (95%), Gaps = 0/1106 (0%)
Strand=Plus/Plus
Query 1 GAAACCATTGAAGCAGCAACAATGATACTACGTCGTTTCATCTGCTACAACGCTTCTTCA 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 31 GAAACCATTGAAGCAGCAGCAATGATACTACGTCGTTTCATCTGCTACAACGCTTCTTCA 90
Query 61 ACTGTTTCATCTATAGCTCCGTCTCCGAAGAAGAAGCCTCTCATCTTCTTAGGCTCTCCT 120
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 91 ACTGTTTCATCTATAGCTCCATCACCGAAGAAGAAGCCTCTCATCTTCTTAGGCTCTCCT 150
Query 121 CAGGTTTCTGTGACTGTGCTTGAAGCTCTTTTCAATGCATCTGCTGCACCAAACTCTTCC 180
||||| || |||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 151 CAGGTCTCCGTGAGTGTGCTTGAAGCTCTTTTCAATGCATCTAATGCTCCAAACTCTTCC 210
Query 181 TTTGAGGTTGCAGGCATTGTTACACAGCCTCCATCAAGGAGAGATCGGGGTAGAAAAGTG 240
|| ||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 211 TTCGAGGTTGCAGGTATTGTTACACAGCCTCCATCAAGGAGAGATAGGGGTAAAAAAGTG 270
Query 241 TTGCCTTCGCCTGTAGCGCAATACGCTCTTGATAAAGGCTTACCTTCTGATCTCATTTTC 300
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 TTGCCTTCACCAGTAGCGCAATACGCTCTTGATAAAGGCTTACCTTCTGATCTCATTTTC 330
Query 301 TCCCCTGAGAAGGCAGGAGATGAAGCATTCTTATCGGCTTTACGAGAGTTGCAACCTGAG 360
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 331 TCCCCTGAGAAGGCAGGAGATGAAGCATTTTTATCGGCTTTAAGAGAGTTGCAACCTGAG 390
Query 361 CTTTGTATTACAGCAGCTTATGGGAATATATTGCCTACTAAGTTCCTTAAAATTCCATTA 420
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 391 CTTTGTATTACAGCAGCTTATGGGAATATTTTGCCTACTAAGTTCCTTAAGATTCCGGTA 450
Query 421 CATGGGACAGTGAACATACACCCAAGTTTGTTGCCCCTGTACCGTGGTGCAGCTCCAGTT 480
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 451 CATGGGACAGTGAACATACACCCAAGTTTGCTGCCGCTGTACCGTGGTGCAGCTCCAGTT 510
Query 481 CAAAGAGCATTACAGGATGGTGTCCCGGAAACAGGAGTATCATTAGCATTTACGGTGCGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 511 CAAAGAGCATTACAGGATGGTGTCCCGGAAACAGGAGTATCATTAGCATTTACTGTGCGT 570
Query 541 AAGTTAGATGCAGGGCCAGTGATTGCCTCTAAGAGGTTCCAAGTGGATGATCTAATAAAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 AAGTTAGATGCAGGGCCAGTGATTGCCTCTAAGAGGTTCCAAGTGGATGATCTAATAAAG 630
Query 601 GCACCAGAACTGCTCTCGTTCCTATTTTCTGAAGGTTCAAAGCTTCTTATCCGTGAACTT 660
||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 631 GCACCAGAACTACTCTCGTTCCTATTTTCTGAAGGTTCTAATCTTCTTATCCGTGAACTT 690
Query 661 CCCTCAATATTTGATGGGTCTGCAAAATCAAAAGCAGCTCCCCAAGATGATTCTAAAGCT 720
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 691 CCCTCGATATTTGATGGGTCCGCAAAATCAAAAGCAGCTCCCCAAGATGATTCTAAAGCT 750
Query 721 ACCTTAGCTCCAAAGATAGCTCCAGATGAGGCTTGGCTCTCTTTTGACGAGGAAGCTTTT 780
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 751 ACCTTAGCTCCAAAGATAGCTCCAGATGAGGCTTGGCTCTCTTTTGACCAGGAAGCTTTT 810
Query 781 GTTCTACATAACAAGGTTCGTGCATTCGCAGGATGGCCGGGAACAAGAGCTAAAGTTGTA 840
|||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct 811 GTTCTACATAACAAGGTTCGTGCATTTGCAGGATGGCCGGGAACACGAGCAAAAGTTGTA 870
Query 841 GTCCTCGATGACAAAAGCGGTCAGCAAAATGTGCTAGAGCTTAAAATCATGTCCACTCGA 900
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 871 GTCCTTGATGAGAAAAGCGGTCAGCAAAATGTGCTAGAGCTTAAAATTATGTCCACTCGA 930
Query 901 GTATGCAAAGATCTGGAAATCCAAGATGGTGGACAAGATTATGTAACTTTCAAGAAAGGT 960
|||||||||||||||||||| || ||| ||| ||||||||||||||||||||||||||||
Sbjct 931 GTATGCAAAGATCTGGAAATTCAGGATAGTGAACAAGATTATGTAACTTTCAAGAAAGGT 990
Query 961 TCATTGGTGTTTCCCTGTGGAGGAGGTACTGCTTTAGAGGTACTAGAAGTCCAGCTTCCT 1020
||| | | |||||||| |||||||||| |||||||||||||| |||||||||||||||
Sbjct 991 TCACTAATATTTCCCTGCAGAGGAGGTACAGCTTTAGAGGTACTGGAAGTCCAGCTTCCT 1050
Query 1021 GGTAAAAAAGCTATCAACGCGGCCGCCTTTTGGAATGGCTTGAGAGGTCAAAAGCTGAAG 1080
||||| ||||| |||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 1051 GGTAAGAAAGCCATCAACGCAGCTGCTTTTTGGAATGGCTTGAGAGGTCAAAAGCTGAAG 1110
Query 1081 AAGCTATGAAGACAGAGACTGAAACA 1106
|||||||||||||| |||||||||||
Sbjct 1111 AAGCTATGAAGACAAAGACTGAAACA 1136
> AT3G31005.1 | Symbols: | Pseudogene of AT1G66520; PDE194 (PIGMENT
DEFECTIVE 194); formyltetrahydrofolate deformylase/ hydroxymethyl-,
formyl- and related transferase | chr3:12662598-12670958
REVERSE LENGTH=398
Length=398
Score = 387 bits (209), Expect = 2e-106
Identities = 268/297 (90%), Gaps = 1/297 (0%)
Strand=Plus/Plus
Query 793 AAGGTTCGTGCATTCGCAGGATGGCCGGGAACAAGAGCTAAAGTTGTAGTCCTCGATGAC 852
||||||||| |||| |||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 103 AAGGTTCGTCCATTTGCAGGATGGCCGGGAACACGAGCCAAAGTTGTAGTCCTTGATGAC 162
Query 853 AAAAGCGGTCAGCAAAATGTGCTAGAGCTTAAAATCATGTCCACTCGAGTATGCAAAGAT 912
|||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 163 AAAAGCGGCCAGCAAAATGTGCTAGAGCTTAAAATTATGTCCACT-GAGTATGCAAAGAT 221
Query 913 CTGGAAATCCAAGATGGTGGACAAGATTATGTAACTTTCAAGAAAGGTTCATTGGTGTTT 972
|||||||||| |||||| |||||| |||||||| ||||||||||||||| | | |||
Sbjct 222 TTGGAAATCCAGGATGGTAAACAAGACTATGTAACATTCAAGAAAGGTTCACTAATATTT 281
Query 973 CCCTGTGGAGGAGGTACTGCTTTAGAGGTACTAGAAGTCCAGCTTCCTGGTAAAAAAGCT 1032
||||| |||||||||| ||||||||||||||||||||||||||| ||||||| |||||
Sbjct 282 CCCTGCAGAGGAGGTACAGCTTTAGAGGTACTAGAAGTCCAGCTTGCTGGTAAGAAAGCC 341
Query 1033 ATCAACGCGGCCGCCTTTTGGAATGGCTTGAGAGGTCAAAAGCTGAAGAAGCTATGA 1089
||||| || || || |||||||||||||||||||||||||||||||||||| |||||
Sbjct 342 ATCAATGCAGCTGCTTTTTGGAATGGCTTGAGAGGTCAAAAGCTGAAGAAGATATGA 398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54367190235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5