BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925695

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56100.1 | Symbols:  | glycine-rich protein / oleosin | chr5...   623    4e-178


> AT5G56100.1 | Symbols:  | glycine-rich protein / oleosin | chr5:22717115-22717751 
FORWARD LENGTH=637
Length=637

 Score =  623 bits (337),  Expect = 4e-178
 Identities = 393/420 (94%), Gaps = 4/420 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGAATCATGGAGG-A--AGATGAAGAAACATAGCCATAACCGATGGAGAAAGGAGG  57
            |||||||||| |||||| |  ||| ||||| ||||||||||||||||||||||||| | |
Sbjct  7    ATGGAGAATCCTGGAGGAAGGAGAAGAAGAGACATAGCCATAACCGATGGAGAAAGAACG  66

Query  58   ACTGGTTCTTCGATTGTGGCTGCAACCGTAACAGCTGTAGCAGTGGTCGGGCCGCTTTTT  117
            || ||||||||| ||||||||||||||||| ||||||| |||||||| || |||||||||
Sbjct  67   ACCGGTTCTTCGGTTGTGGCTGCAACCGTAGCAGCTGTTGCAGTGGTAGGACCGCTTTTT  126

Query  118  GGTCTGATGAGTTTCAGCTTTGTGGCGACGGTGACTCTGTTTCTGATCGCTTCTCCATTG  177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  127  GGTCTGATGAGTTTCAGCTTTGTGGCGACGGTGACTCTGTTTCTGATCGCTTCTCCATTG  186

Query  178  CTGCTGATATTTGCTCCAG-TTTTATGGTGACGGTAGCGGTTCTTGTGGCAGCAATGGTT  236
            ||||||||||||||||||| ||||||||| |||||||||||||||||| | || ||||||
Sbjct  187  CTGCTGATATTTGCTCCAGCTTTTATGGTAACGGTAGCGGTTCTTGTGTCGGCTATGGTT  246

Query  237  GGTGTTGGGGTAGCTGCAGCCATGTGGATGATGGGAATAGCTGCTTTGGTATGTTGTGGC  296
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  247  GGTGTTGGGGTAGCTGCAGCCATGTGGATGATGGGAATAGCCGCTTTGGTATGTTGTGGC  306

Query  297  CGAGAGATTGGTATTGAAACCGGAGTGGCTGGGAGGATGGTTGAGTCGGTGGTGAGAGAG  356
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| 
Sbjct  307  CGAGAGATTGGTATTGAAACCGGACTGGCTGGGAGGATGGTTGAGTCGGTGGTGAGAGAA  366

Query  357  TTAGGTTACGGTCGGAGTCGTTACTTGCGAAACAAATCAGAGTATGGTTATTCTTCTTCT  416
            |||||||||||||||||||||||||||||| ||||||||||| || |||||||  |||||
Sbjct  367  TTAGGTTACGGTCGGAGTCGTTACTTGCGAGACAAATCAGAGGATAGTTATTCAACTTCT  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21212990078


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5