BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925701
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15710.1 | Symbols: | TRAF-like family protein | chr2:68426... 359 3e-98
> AT2G15710.1 | Symbols: | TRAF-like family protein | chr2:6842648-6845103
FORWARD LENGTH=1098
Length=1098
Score = 359 bits (194), Expect = 3e-98
Identities = 296/345 (86%), Gaps = 8/345 (2%)
Strand=Plus/Plus
Query 304 TGTTTGCATATCTTGTGTTCTTCGTCTATAACAAGAAAGCAAACAAATACTTTACTATCC 363
|||| |||||| | | ||||||||||| |||||||||| ||||||||||||||| || |
Sbjct 494 TGTTCGCATATATCATTTTCTTCGTCTACAACAAGAAAGAAAACAAATACTTTACCATTC 553
Query 364 AAGATGTTGAAGTAAAGCGGTTCAATGCCTTAAGAACGGTGTGGGGATTACCACAAGTGC 423
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
Sbjct 554 AAGATGTTGAAGTAAAGCGGTTCAATGCATTAAGAACGGTGTGGGGATTATCACAAGTTC 613
Query 424 TTTCACTTG-GAACTTTCAATGACCCTAAAAATGGATTCATC-TTCGAGGGAGAACATTG 481
||||||||| || | |||||||||| | ||||||||| || | || ||||||||||| ||
Sbjct 614 TTTCACTTGAGA-CATTCAATGACCTTGAAAATGGATACA-CATTTGAGGGAGAACAATG 671
Query 482 TGAGTTTGGTGTTGATGTGATGGTTTCTCCACCTTTTAACAAGTGGGAAGTCGTTTCTTT 541
||||||||||||||||||||||||| || |||| ||| ||||||||||||||| |||||
Sbjct 672 TGAGTTTGGTGTTGATGTGATGGTTGCTTCACCCATTACCAAGTGGGAAGTCGTCTCTTT 731
Query 542 TGATGAAAAACTCTATAATCCCAAGTTCTCGTGGAATGTTAAGAATTTCTCGATGCTGAG 601
|||||| |||||| ||| || ||||||||| |||| ||||||| |||||||| |||| |
Sbjct 732 TGATGAGAAACTCGATATTCTCAAGTTCTCCTGGAGTGTTAAGGATTTCTCGGTGCTTAA 791
Query 602 AGAGAATCTT-TACATATCC-AATAGCTTTCCAATGGGAGGAAGA 644
|||| | || || |||| || || ||| ||||||||||||||
Sbjct 792 AGAGGAG-TTCTATGTATCAGAA-AGATTTTCAATGGGAGGAAGA 834
Score = 213 bits (115), Expect = 3e-54
Identities = 209/253 (83%), Gaps = 12/253 (5%)
Strand=Plus/Plus
Query 40 ATTCTACAAATGTGGAGATCTGGAGAGAGCATCCTCCTTCTTCTAACTCTCTCAAGATCA 99
||||||||| |||| | | || |||||| ||||||||||||||| |||| ||||||||||
Sbjct 257 ATTCTACAATTGTGAATAACTTGAGAGAACATCCTCCTTCTTCTTACTCCCTCAAGATCA 316
Query 100 ACACAC--TCTCAAAGCTTAAC-AGTGATGTATACAAATCCCGTCGTTTCTTGTCCGGTG 156
||| || |||| || ||| || ||| ||| |||| | |||||||||||||||||
Sbjct 317 ACAAACTTTCTC-AA-CTT-ACTTTTGACAAATATGAATCTCATCGTTTCTTGTCCGGTG 373
Query 157 GATACAACTGGAGATTGGTTATATACCCAAAAGGAAATGAAAAGGACAATGGAAATGGAT 216
||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |||||
Sbjct 374 GATACAACTGGAGATTGGTTATATACCCAAAAGGAAACGAAAAAGACAAAGGAAGTGGAT 433
Query 217 TTATTTCAATGTATGTGGAATTTGGTGACACAA--GCCTTATGTCTACACCACCAAGTG- 273
|||| || |||||||||||||||| |||||| | || ||||||| |||||| ||
Sbjct 434 TTATCTCTATGTATGTGGAATTTGACAACACAAAAGTCTC--GTCTACATCACCAA-TGG 490
Query 274 AGGTATTTGCATA 286
|||| || |||||
Sbjct 491 AGGTGTTCGCATA 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48827590884
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5