BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925701 Length=997 Score E Sequences producing significant alignments: (Bits) Value AT2G15710.1 | Symbols: | TRAF-like family protein | chr2:68426... 359 3e-98 > AT2G15710.1 | Symbols: | TRAF-like family protein | chr2:6842648-6845103 FORWARD LENGTH=1098 Length=1098 Score = 359 bits (194), Expect = 3e-98 Identities = 296/345 (86%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 304 TGTTTGCATATCTTGTGTTCTTCGTCTATAACAAGAAAGCAAACAAATACTTTACTATCC 363 |||| |||||| | | ||||||||||| |||||||||| ||||||||||||||| || | Sbjct 494 TGTTCGCATATATCATTTTCTTCGTCTACAACAAGAAAGAAAACAAATACTTTACCATTC 553 Query 364 AAGATGTTGAAGTAAAGCGGTTCAATGCCTTAAGAACGGTGTGGGGATTACCACAAGTGC 423 |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | Sbjct 554 AAGATGTTGAAGTAAAGCGGTTCAATGCATTAAGAACGGTGTGGGGATTATCACAAGTTC 613 Query 424 TTTCACTTG-GAACTTTCAATGACCCTAAAAATGGATTCATC-TTCGAGGGAGAACATTG 481 ||||||||| || | |||||||||| | ||||||||| || | || ||||||||||| || Sbjct 614 TTTCACTTGAGA-CATTCAATGACCTTGAAAATGGATACA-CATTTGAGGGAGAACAATG 671 Query 482 TGAGTTTGGTGTTGATGTGATGGTTTCTCCACCTTTTAACAAGTGGGAAGTCGTTTCTTT 541 ||||||||||||||||||||||||| || |||| ||| ||||||||||||||| ||||| Sbjct 672 TGAGTTTGGTGTTGATGTGATGGTTGCTTCACCCATTACCAAGTGGGAAGTCGTCTCTTT 731 Query 542 TGATGAAAAACTCTATAATCCCAAGTTCTCGTGGAATGTTAAGAATTTCTCGATGCTGAG 601 |||||| |||||| ||| || ||||||||| |||| ||||||| |||||||| |||| | Sbjct 732 TGATGAGAAACTCGATATTCTCAAGTTCTCCTGGAGTGTTAAGGATTTCTCGGTGCTTAA 791 Query 602 AGAGAATCTT-TACATATCC-AATAGCTTTCCAATGGGAGGAAGA 644 |||| | || || |||| || || ||| |||||||||||||| Sbjct 792 AGAGGAG-TTCTATGTATCAGAA-AGATTTTCAATGGGAGGAAGA 834 Score = 213 bits (115), Expect = 3e-54 Identities = 209/253 (83%), Gaps = 12/253 (5%) Strand=Plus/Plus Query 40 ATTCTACAAATGTGGAGATCTGGAGAGAGCATCCTCCTTCTTCTAACTCTCTCAAGATCA 99 ||||||||| |||| | | || |||||| ||||||||||||||| |||| |||||||||| Sbjct 257 ATTCTACAATTGTGAATAACTTGAGAGAACATCCTCCTTCTTCTTACTCCCTCAAGATCA 316 Query 100 ACACAC--TCTCAAAGCTTAAC-AGTGATGTATACAAATCCCGTCGTTTCTTGTCCGGTG 156 ||| || |||| || ||| || ||| ||| |||| | ||||||||||||||||| Sbjct 317 ACAAACTTTCTC-AA-CTT-ACTTTTGACAAATATGAATCTCATCGTTTCTTGTCCGGTG 373 Query 157 GATACAACTGGAGATTGGTTATATACCCAAAAGGAAATGAAAAGGACAATGGAAATGGAT 216 ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| ||||| Sbjct 374 GATACAACTGGAGATTGGTTATATACCCAAAAGGAAACGAAAAAGACAAAGGAAGTGGAT 433 Query 217 TTATTTCAATGTATGTGGAATTTGGTGACACAA--GCCTTATGTCTACACCACCAAGTG- 273 |||| || |||||||||||||||| |||||| | || ||||||| |||||| || Sbjct 434 TTATCTCTATGTATGTGGAATTTGACAACACAAAAGTCTC--GTCTACATCACCAA-TGG 490 Query 274 AGGTATTTGCATA 286 |||| || ||||| Sbjct 491 AGGTGTTCGCATA 503 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48827590884 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5