BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925706

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G66985.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   315    2e-85


> AT5G66985.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26743279-26743808 
FORWARD LENGTH=530
Length=530

 Score =  315 bits (170),  Expect = 2e-85
 Identities = 243/276 (88%), Gaps = 13/276 (5%)
 Strand=Plus/Plus

Query  4    TTTT-TATCTCTACTACAATGGAGTTTGTGATTTTGGAAGGAGAGGTGAGTTTGAAAGAG  62
            |||| | |||||||||||||||| |||| || || | ||||||||| || ||||||||| 
Sbjct  116  TTTTCTTTCTCTACTACAATGGAATTTGCGACTTCGAAAGGAGAGGAGATTTTGAAAGAT  175

Query  63   GAGCAAGTGTTAGTGTCAAAGCAGCTACATCTGATATCGTCT-----G-AAACGCAAACG  116
            |||| |     |||||| ||||||||||| ||||||||||||     | |||||||||||
Sbjct  176  GAGC-A-----AGTGTCCAAGCAGCTACACCTGATATCGTCTGAAACGCAAACGCAAACG  229

Query  117  CTGAACAGAAGAGCCGTTCTAAACCGCATCCGCAACCACAAATGTATTCACAAAATCAAG  176
            ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  230  CTGAACAAAAAAGCCGTTCTAAACCGCATCCGCAACCACAAATGTATTCACAAAATCAAG  289

Query  177  AGTCTTCTCCACACCACCGCGGCTAATGACGGAGCCACCGTCGATGCTGATCATTATCGG  236
            |||||||| |||||||||||||||||  |||||||||||||||| |||||| ||||||||
Sbjct  290  AGTCTTCTTCACACCACCGCGGCTAACAACGGAGCCACCGTCGACGCTGATTATTATCGG  349

Query  237  TGGATTGATAGTGGCGATGTCTTCTCTTGTCCGTGA  272
            ||||||||||| ||||||||||| ||||||||||||
Sbjct  350  TGGATTGATAGCGGCGATGTCTTTTCTTGTCCGTGA  385



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13471756732


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5