BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925710

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65840.1 | Symbols: ATPAO4, PAO4 | polyamine oxidase 4 | chr...   313    5e-85


> AT1G65840.1 | Symbols: ATPAO4, PAO4 | polyamine oxidase 4 | chr1:24489780-24493024 
FORWARD LENGTH=2183
Length=2183

 Score =  313 bits (169),  Expect = 5e-85
 Identities = 180/185 (97%), Gaps = 2/185 (1%)
 Strand=Plus/Plus

Query  9    GAACaaaaaaaaaaaTGCTCCGATCACGGAATTGTAAGATCTCCGCCGCGAACGAAGCCG  68
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  102  GAACAAAAAAAAAAATGCTCCGATCACGGAATTGTAAGATCTCCGCCGCGAACGAAGCCG  161

Query  69   TTATATCTAATCGTCTTTCAATTTCTAATCTCAAAGTTTTATTCGTTTTTGAATCCTCGC  128
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  162  TTATTTCTAATCGTCTTTCAATTTCTAATCTCAAAGTTTTATTCGTTTTTGAATCCTCGC  221

Query  129  CATTGAATAATTTGATTAATCGTTTTTCCGATAAGCTTCTTCGTTGAATCCT-TCTCCGA  187
            ||||||||||||||||||||||||||||||||||||||| |||||||| | | |||||||
Sbjct  222  CATTGAATAATTTGATTAATCGTTTTTCCGATAAGCTTCGTCGTTGAA-CTTATCTCCGA  280

Query  188  TCTCT  192
            |||||
Sbjct  281  TCTCT  285



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8651832372


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5