BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925711
Length=1534
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65840.1 | Symbols: ATPAO4, PAO4 | polyamine oxidase 4 | chr... 2453 0.0
> AT1G65840.1 | Symbols: ATPAO4, PAO4 | polyamine oxidase 4 | chr1:24489780-24493024
FORWARD LENGTH=2183
Length=2183
Score = 2453 bits (1328), Expect = 0.0
Identities = 1453/1515 (96%), Gaps = 2/1515 (0%)
Strand=Plus/Plus
Query 3 TTTCCAACTAAATCTTCAATGGATAAGAAGAAGAATTCGTTTCCAGATAATCTTCCTGAA 62
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 TTTCCAACAAAATCTTCAATGGATAAGAAGAAGAATTCGTTTCCAGATAATCTTCCTGAA 435
Query 63 GGCACAATCTCTGAGATTATGCAGAAGCAGAACAATGTGCAGCCATCTGTTATTGTGATT 122
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 436 GGCACAATCTCTGAGCTTATGCAGAAGCAGAACAATGTGCAGCCTTCTGTTATTGTGATT 495
Query 123 GGTAGTGGTATATCAGGTCTTGCTGCTGCTAGGAATCTCTCTGAAGCATCTTTTAAGGTG 182
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 496 GGTAGTGGTATATCAGGTCTTGCTGCTGCTAGGAATCTCTCTGAAGCATCTTTCAAGGTG 555
Query 183 ACTGTTCTTGAATCACGCGATAGGATTGGTGGTCGTATCCATACGGATTATTCGTTTGGC 242
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 556 ACTGTTCTTGAATCACGCGATAGGATTGGTGGTCGTATCCATACGGATTATTCCTTTGGT 615
Query 243 TGTCCTGTTGATATGGGAGCTTCATGGTTACATGGAGTCTCTGATGAGAATCCATTGGCT 302
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 616 TGTCCTGTTGATATGGGAGCTTCATGGTTACATGGAGTCTCTGATGAGAATCCCTTAGCT 675
Query 303 CCCATTATACGCCGTCTAGGGCTGACTTTATACCGAACTAGCGGGGATGATTCCATCTTG 362
||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 676 CCCATTATACGCCGTTTAGGACTGACTTTATACCGAACTAGCGGGGATGACTCCATCTTG 735
Query 363 TATGATCATGATCTGGAGAGTTATGGACTTTTCGACATGCGTGGGAATAAAATTCCGCCG 422
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 736 TATGATCATGATCTGGAGAGTTATGGACTTTTTGACATGCATGGGAATAAAATTCCGCCG 795
Query 423 CAGTTGGTCACTGAAGTTGGAGATGCATTCAAGAGAATTCTCGAAGAGACGGAGAAAATA 482
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 CAGTTGGTTACTAAAGTTGGAGATGCATTCAAGAGAATTCTCGAAGAGACGGAGAAAATA 855
Query 483 AGGGATGAAACT-ACAGATGACATGTCTGTTCTTCAAGGAATATCTATTGTCTTGGATAG 541
|||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 856 AGGGATGAAACTGCCA-ATGACATGTCTGTTCTTCAAGGAATATCTATCGTCTTGGATAG 914
Query 542 AAATCCAGAACTAAGGCTACAAGGTATAGCGTACGAAGTTTTGCAGTGGTACTTATGTAG 601
||||||||||||||||| | |||| || |||||||||||||| |||||||||||||||||
Sbjct 915 AAATCCAGAACTAAGGCAAGAAGGGATGGCGTACGAAGTTTTACAGTGGTACTTATGTAG 974
Query 602 GATGGAGGCATGGTTTGCTGTAGATGCGAATTTGATATCACTAAAATGTTGGGATCAGGA 661
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 975 GATGGAGGCGTGGTTTGCTGTAGATGCGAATTTAATTTCACTAAAATGTTGGGATCAGGA 1034
Query 662 TGAATGTCTTTCTGGTGGTCATGGTTTAATGGTGCAGGGTTACGAGCCAGTAATCAGAAC 721
|||||||||||| |||||||||||| |||||||||||||||| |||||||| ||||||||
Sbjct 1035 TGAATGTCTTTCAGGTGGTCATGGTCTAATGGTGCAGGGTTATGAGCCAGTGATCAGAAC 1094
Query 722 AATTGCAAAAGATCTTGATATTCGCTTGAGCCATAGGGTTACTAAAGTTGTAAGAACATC 781
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1095 AATTGCAAAAGATCTTGATATTCGCTTGAACCATAGGGTTACTAAAGTTGTAAGAACATC 1154
Query 782 TAATAACAAGGTGATAGTCGCAGTTGAAGGTGGAACCAATTTTGTTGCTGATGCTGTTAT 841
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1155 TAATAACAAGGTGATAGTCGCAGTTGAAGGCGGAACCAATTTTGTTGCTGATGCTGTTAT 1214
Query 842 TATTACGGTTCCAATCGGTGTCCTCAAGGCAAATCTAATTCAATTCGAGCCAGAGCTCCC 901
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1215 TATTACGGTTCCAATCGGTGTTCTCAAGGCAAATCTAATTCAATTTGAGCCAGAGCTCCC 1274
Query 902 ACAATGGAAAACCTCTGCGATATCGGGTCTCGGTGTAGGCAATGAGAATAAGATTGCCCT 961
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1275 ACAATGGAAAACCTCTGCGATATCGGGTCTCGGTGTAGGCAATGAGAATAAGATTGCCTT 1334
Query 962 GAGATTTGACAGAGCGTTTTGGCCCAATGTGGAGTTCCTCGGGATGGTGGCTCCGACTTC 1021
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1335 GAGATTTGACAGAGCGTTTTGGCCTAATGTGGAGTTCCTCGGGATGGTGGCACCGACTTC 1394
Query 1022 TTACGCATGTGGCTATTTTCTGAATCTTCATAAAGCAACAGGCCATCCGGTGCTTGTTTA 1081
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1395 TTACGCATGTGGCTATTTTCTGAATCTTCACAAGGCAACAGGCCATCCGGTGCTTGTTTA 1454
Query 1082 TATGGCTGCAGGGAATCTAGCACAAGACTTGGAAAAGCTATCTGATGAAGCTACAGCAAA 1141
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1455 TATGGCTGCAGGGAATCTAGCACAAGACCTCGAAAAGCTATCTGATGAAGCTACAGCAAA 1514
Query 1142 TTTCGTGATGCTGCAACTTAAGAAAATGTTTCCCGACGCTCCAGACCCGGCTCAATATCT 1201
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 1515 TTTCGTGATGCTGCAACTTAAGAAAATGTTTCCAGACGCACCTGACCCGGCTCAATATCT 1574
Query 1202 AGTGACAAGGTGGGGAACAGATCCAAACACATTAGGGTGTTATGCGTATGACGTAGTAGG 1261
||||||| |||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1575 AGTGACACGGTGGGGAACGGATCCAAATACATTGGGGTGTTATGCGTATGACGTAGTAGG 1634
Query 1262 GATGCCGGAAGATCTGTACCCGAGGCTAGGAGAGCCGGTTGATAATATTTTCTTCGGCGG 1321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1635 AATGCCGGAAGATCTGTACCCGAGGCTAGGAGAGCCGGTTGATAATATTTTCTTCGGAGG 1694
Query 1322 AGAAGCCGTGAATGTGGAGCATCAAGGATCGGCTCATGGAGCCTTCTTAGCAGGAGTCAC 1381
|||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||| |
Sbjct 1695 AGAAGCCGTGAACGTCGAGCATCAAGGATCCGCTCACGGAGCTTTCTTAGCAGGAGTCTC 1754
Query 1382 AGCCTCGCAGAATTGTCAAAGGTATATCTTTGAGCGACTCGGGGCTTGGGAGAAACTTAA 1441
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1755 GGCCTCGCAGAATTGTCAAAGGTATATCTTTGAACGACTCGGGGCTTGGGAGAAACTCAA 1814
Query 1442 ACTTGTTTCTCTTATGAGGAACAGTGACATTCTCGAAACTGCAACTGTGCCTCTCCAAAT 1501
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1815 GCTTGTTTCTCTTATGGGGAACAGTGACATTCTCGAAACTGCAACTGTGCCTCTCCAAAT 1874
Query 1502 CTCCAGGATGTGATT 1516
|||||||||||||||
Sbjct 1875 CTCCAGGATGTGATT 1889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75702421860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5