BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925718
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33580.2 | Symbols: ATBCA5, BCA5 | beta carbonic anhydrase 5... 431 4e-120
AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like super... 270 1e-71
> AT4G33580.2 | Symbols: ATBCA5, BCA5 | beta carbonic anhydrase
5 | chr4:16138360-16141624 FORWARD LENGTH=1361
Length=1361
Score = 431 bits (233), Expect = 4e-120
Identities = 331/374 (89%), Gaps = 23/374 (6%)
Strand=Plus/Plus
Query 1 AAGCTTCAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 AAGCTACAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 396
Query 61 ATGGGGTTGCAATTAATAGACAAAATGACAATGATGTATTTGACGACATGAAACAGCGGT 120
|||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 397 ATGGGGTTGCAATTGATAGACAAAACAACACTGATGTATTTGACGACATGAAACAGCGGT 456
Query 121 TCCTCGCCTTCAAGAAGC---A-T--A--A--G-T-ACTTT-TATGCT-C-AAGCTC-CG 164
|||| ||||||||||||| | | | | | | ||||| | || | || || |
Sbjct 457 TCCTGGCCTTCAAGAAGCTTAAGTACATCAGGGATGACTTTGAACACTACAAAAATCTGG 516
Query 165 AAG-TG-T-AAG---CAACAGTTTCTGGTGATCGCTTGTGCAGACTCTAGGGTTTGTCCT 218
|| || | ||| ||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct 517 CAGATGCTCAAGCTCCAA-AGTTTCTGGTGATTGCTTGTGCAGACTCTAGAGTTTGTCCT 575
Query 219 TCTACTGTCCTGGGATTCCAACCGGGTGATGCATTCACTGTTCGCAACATTGCAAATTTA 278
||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 576 TCTGCTGTCCTGGGATTCCAACCGGGTGACGCATTCACTGTTCGTAACATTGCAAATTTA 635
Query 279 GTACCTTCATATGAGTCGGGACCTACTGAAACCAAAGCTGCTCTAGAGTTCTCTGTGAAT 338
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 GTACCTCCATATGAGTCTGGACCTACTGAAACCAAAGCTGCTCTAGAGTTCTCTGTGAAT 695
Query 339 ACTCTTAATGTGGA 352
||||||||||||||
Sbjct 696 ACTCTTAATGTGGA 709
> AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like superfamily
protein | chr2:7808871-7810795 REVERSE LENGTH=1232
Length=1232
Score = 270 bits (146), Expect = 1e-71
Identities = 201/226 (89%), Gaps = 9/226 (4%)
Strand=Plus/Plus
Query 348 GTGGAGGATGGGCAAAACTTGGATTATAATCATCACTACTCATTTGCGCCTTGCAACTTC 407
||||||||||||| |||| ||| ||||||| ||||||| ||| |||| |||||||
Sbjct 744 GTGGAGGATGGGC-AAACATGG------ATCATCATTACTCATCTGCACCTTACAACTTC 796
Query 408 TTGC-ATAGACCAAAGCCTATGTTTGGTCTGGAAGGTCGTCAAGAAGAAGAAGAATGTGG 466
|| | ||||| |||||||| |||||||||| ||||||| |||||||||||||||||||||
Sbjct 797 TT-CGATAGAGCAAAGCCTCTGTTTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGG 855
Query 467 TGTCAATGCTTATCTGGAACATCGACGTAGGCTTCCTCTCTTCCCTATGCACGGTGAAGA 526
|| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 856 TGGCGATGCTTATCTGGAACATCGACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGA 915
Query 527 TCACCTCAACGGTGATAGCGGTGCTATCTGGAAGTATGGCCAATCG 572
|||| ||||||||| ||| ||||| |||||||||||||||||||||
Sbjct 916 TCACATCAACGGTGGTAGTGGTGCCATCTGGAAGTATGGCCAATCG 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31496810169
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5