BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925737
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65960.2 | Symbols: GAD2 | glutamate decarboxylase 2 | chr1:... 2460 0.0
AT5G17330.1 | Symbols: GAD, GAD1 | glutamate decarboxylase | ch... 869 0.0
> AT1G65960.2 | Symbols: GAD2 | glutamate decarboxylase 2 | chr1:24552003-24557730
FORWARD LENGTH=2053
Length=2053
Score = 2460 bits (1332), Expect = 0.0
Identities = 1467/1533 (96%), Gaps = 6/1533 (0%)
Strand=Plus/Plus
Query 1 TCTCTCTCACTAAAAAGAAACAAAGATGGTTTTGACAAAAACCGCAACGAATGATGAATC 60
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 TCTCTTTCACTAAACAGAAACAAAGATGGTTTTGACAAAAACCGCAACGAATGATGAATC 126
Query 61 TGTCAGCACCATGTTCGGATCTCGCTATGTTCGCACTACACTTCCCAAGTATGAGATTGG 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TGTCTGCACCATGTTCGGATCTCGCTATGTTCGCACTACACTTCCCAAGTATGAGATTGG 186
Query 121 TGAGAATTCGATACCGAAAGACGCTGCCTATCAGATCATAAAAGATGAGCTGATGCTTGA 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 187 TGAGAATTCGATACCGAAAGACGCTGCGTATCAGATCATAAAAGATGAGCTGATGCTTGA 246
Query 181 TGGTAACCCGAGGCTTAACCTAGCTTCGTTTGTGACTACATGGATGGAACCAGAGTGTGA 240
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 247 TGGTAACCCAAGGCTTAACCTAGCTTCTTTTGTGACTACATGGATGGAACCAGAGTGTGA 306
Query 241 CAAACTCATCATGGACTCTATCAATAAGAACTACGTTGATATGGATGAGTACCCTGTCAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 CAAACTCATCATGGACTCTATCAATAAGAACTACGTTGATATGGATGAGTACCCTGTCAC 366
Query 301 AACTGAGTTTCAGAACCGATGTGTAAACATTATAGCTCGACTGTTCAATGCGCCACTCAA 360
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 367 AACTGAGCTCCAGAACCGATGTGTAAACATTATAGCTCGACTGTTCAATGCGCCACTCGA 426
Query 361 GGAATCTGAGACTGCGGTGGGAGTAGGGACAGTTGGTTCTTCAGAAGCCATCATGTTAGC 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GGAATCTGAGACGGCGGTGGGAGTAGGGACAGTTGGTTCTTCAGAAGCCATCATGTTAGC 486
Query 421 CGGATTGGCCTTCAAAAGAAAATGGCAAAACAGACGCAAGGCTGAGGGTAAACCCTATGA 480
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 487 CGGATTGGCCTTCAAAAGAAAATGGCAGAACAAACGCAAGGCTGAGGGTAAACCCTATGA 546
Query 481 CAAACCCAACATTGTCACCGGAGCCAATGTTCAAGTGTGCTGGGAGAAATTCGCTCGGTA 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 547 CAAACCCAACATTGTCACCGGAGCCAATGTTCAAGTTTGCTGGGAGAAATTCGCTCGGTA 606
Query 541 CTTCGAGGTGGAGCTAAAAGAGGTAAAGCTAAGTGAAGGTTACTACGTGATGGATCCAGA 600
|||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 607 CTTCGAGGTGGAGCTAAAGGAAGTAAACCTAAGTGAAGGTTACTACGTGATGGATCCAGA 666
Query 601 CAAAGCAGCAGAAATGGTAGACGAGAACACAATCTGTGTCGCGGCCATTCTTGGG-TCCA 659
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 667 CAAAGCAGCAGAAATGGTAGACGAGAACACAATCTGTGTCGCAGCCATA-TTGGGATCCA 725
Query 660 CACTCAATGGTGAGTTCGAAGACGTGAAGCGTCTCAATGACTTGCTGGTCAAGAAAAATG 719
||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 726 CACTCAACGGTGAGTTCGAAGACGTGAAACGTCTCAATGACTTGCTAGTCAAGAAAAACG 785
Query 720 AGGAGACTGGTTGGAACACACCGATCCACGTAGATGCAGCAAGTGGAGGGTTCATAGCTC 779
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 786 AGGAGACTGGTTGGAACACACCGATCCACGTGGATGCAGCAAGTGGAGGGTTCATAGCTC 845
Query 780 CATTTATCTATCCTGAATTGGAATGGGACTTTAGACTTCCTTTGGTTAAGAGCATCAACG 839
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 846 CGTTTATCTATCCTGAATTAGAATGGGACTTTAGGCTTCCTTTGGTTAAGAGCATCAACG 905
Query 840 TGAGTGGTCACAAGTATGGACTTGTCTATGCTGGTATTGGTTGGGTCGTGTGGAGGGCAT 899
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 906 TGAGTGGTCACAAGTATGGACTAGTCTATGCTGGTATTGGTTGGGTCGTGTGGAGGGCAG 965
Query 900 CAGAGGATTTGCCTGAAGAGCTTATCTTTCATATTAACTATCTTGGTTCTGATCAACCCA 959
|||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 966 CAGAGGATTTACCTGAAGAGCTTATCTTTCATATTAATTATCTTGGTGCTGATCAACCCA 1025
Query 960 CTTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATACTATCAACTCA 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1026 CTTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATACTACCAGCTCA 1085
Query 1020 TTCGTCTTGGGTTCGAGGGGTACAAGAATGTGATGGAGAATTGCATAGAGAACATGGTGG 1079
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1086 TTCGTCTTGGATTCGAGGGGTACAAAAATGTGATGGAGAATTGCATAGAGAACATGGTGG 1145
Query 1080 TTCTCAAAGAAGGGATAGAGAAAACAGAGCGTTTCAACATAGTTTCCAAGGACCAAGGAG 1139
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1146 TTCTCAAAGAAGGTATAGAGAAAACAGAGCGTTTCAACATAGTCTCAAAGGACCAAGGAG 1205
Query 1140 TGCCAGTCGTAGCCTTCTCTCTCAAGGACCATAGTTTCCACAACGAGTTCGAGATCTCTG 1199
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 TGCCAGTCGTCGCCTTCTCTCTCAAGGACCATAGTTTCCACAACGAGTTCGAGATCTCTG 1265
Query 1200 AGATGCTACGCCGTTTTGGATGGATCGTCCCGGCTTACACTATGCCTGCGGATGCGCAAC 1259
|||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||| || |
Sbjct 1266 AGATGCTACGTCGTTTTGGCTGGATCGTCCCAGCTTACACTATGCCTGCCGATGCACAGC 1325
Query 1260 ACATCACGGTTCTACGTGTTGTCATCAGGGAAGATTTCTCAAGAACACTCGCGGAAAGAC 1319
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1326 ACATCACGGTTCTGCGTGTTGTCATCAGGGAAGATTTCTCAAGAACACTCGCGGAGAGAC 1385
Query 1320 TTGTAG-TCGATATTGT-GAAGGTGCTTCACGAGCTAGATACCTTGCCTTCCAAGATATC 1377
|||| | | |||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1386 TTGTTGCT-GATATT-TCGAAGGTGCTTCATGAGCTAGATACCTTGCCTTCCAAGATATC 1443
Query 1378 TAAGAAGATGGGAATAGAAGGGATCGCAGAAAATGTTAAGGATAAGAAAATGGAGAGGGA 1437
||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||| |||
Sbjct 1444 TAAGAAGATGGGAATAGAAGGGATCGCGGAAAATGTAAAGGAGAAGAAGATGGAGAAGGA 1503
Query 1438 GGCTCTGATGGAAGTTATTGTTGGATGGAGGAAGTTTGTGAAGGATAGGAAGAAGATGAA 1497
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1504 GATTCTGATGGAAGTTATTGTTGGATGGAGGAAGTTTGTGAAGGAGAGGAAGAAGATGAA 1563
Query 1498 TGGTGTGTGCTAAGGAAGTGTGTTGTGTTTGTG 1530
|||||||||||||| |||||||||| ||||||
Sbjct 1564 TGGTGTGTGCTAAGCAAGTGTGTTGCCTTTGTG 1596
> AT5G17330.1 | Symbols: GAD, GAD1 | glutamate decarboxylase |
chr5:5711012-5715075 FORWARD LENGTH=1874
Length=1874
Score = 869 bits (470), Expect = 0.0
Identities = 1009/1266 (80%), Gaps = 50/1266 (4%)
Strand=Plus/Plus
Query 128 TCGATACCGAAAGACGCTGCCTATCAGATCATAAAAGATGAGCTGATGCTTGATGGTAAC 187
||||| || || || || || ||||||||||| || || |||||||||||||| || ||
Sbjct 235 TCGATTCCTAAGGAAGCGGCGTATCAGATCATCAACGACGAGCTGATGCTTGACGGGAAT 294
Query 188 CCGA-GGCTT-AACCTAGCTTCGTTTGTGACTACATGGATGGAACCAGAGTGTGACAAAC 245
|| | || || ||| |||| || |||||||| ||||||||||| || |||||||| ||||
Sbjct 295 CC-ACGG-TTGAACTTAGCCTCCTTTGTGACGACATGGATGGAGCCTGAGTGTGATAAAC 352
Query 246 TCATCATGGACTCTATCAATAAGAACTACGTTGATATGGATGAGTACCCTGTCACAACTG 305
|||||||| ||| ||||| |||||||| ||||| ||||| |||||||| ||||| || |
Sbjct 353 TCATCATGTCCTCCATCAACAAGAACTATGTTGACATGGACGAGTACCCCGTCACCACCG 412
Query 306 AGTTTCAGAACCGATGTGTAAACATTATAGCTCGA-CTGTTCAATGCGCCACTCA-AGGA 363
| |||||||||||||||| ||||| || || | | || |||||||| || | | | ||
Sbjct 413 AACTTCAGAACCGATGTGTGAACATGATTGCAC-ATCTATTCAATGCACC-GTTAGAAGA 470
Query 364 ATCTGAGACTGCGGTGGGAGTAGGGACAGTTGGTTCTTCAGAAGCCATCATGTTAGCCGG 423
| ||||| || || |||||||| || ||||| || || || ||||| ||||| |||||
Sbjct 471 GGCGGAGACCGCCGTCGGAGTAGGAACCGTTGGATCATCGGAGGCCATAATGTTGGCCGG 530
Query 424 ATTGGCCTTCAAAAGAAAATGGCAAAAC-AGACGCAAGGCTGAGGGTAAACCCTAT-GAC 481
||||||||||| | |||||||| ||| || ||||| ||||| || |||||| | ||
Sbjct 531 TTTGGCCTTCAAGCGTAAATGGCAGAACAAG-CGCAAAGCTGAAGGCAAACCC-GTCGAT 588
Query 482 AAACCCAACATTGTCACCGGAGCCAATGTTCAAGTGTGCTGGGAGAAATTCGCTCGGTAC 541
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 589 AAACCCAACATTGTCACCGGAGCCAATGTTCAAGTGTGTTGGGAGAAATTCGCTAGGTAC 648
Query 542 TTCGAGGTGGAGCTAAAAGAGGT-AAAGCTAAGTGAAGGTTACTACGTGATGGATCCAGA 600
|| ||||| || || || || || ||| | |||||||| ||||| |||||||| || |
Sbjct 649 TTTGAGGTTGAACTTAAGGAAGTGAAAT-TGAGTGAAGGATACTATGTGATGGACCCTCA 707
Query 601 -CAAAGCAGCAGAAATGGTAGACGAGAACACAATCTGTGTCGCGGCCATTCTTGGGTCCA 659
||| || | || ||||| || |||||||| || ||||| |||||||||||||| ||||
Sbjct 708 ACAA-GCTGTTGATATGGTTGATGAGAACACCATTTGTGTTGCGGCCATTCTTGGTTCCA 766
Query 660 CACTCAATGGTGAGTTCGAAGACGTGAAGCGTCTC-AATGA-CTTGCT-GGTCAAGAAA- 715
| || ||||| || |||||||| || || | ||| || || || || |||| | |||
Sbjct 767 CTCTTAATGGAGAATTCGAAGATGTTAAAC-TCTTGAACGATCT--CTTGGTCGA-AAAG 822
Query 716 AATGAGGAGACTGGTTGGAACACACCGATCCACGTAGATGCAGCAAGTGGAGGGTTCATA 775
|| | || || || ||| | ||||| |||||||| ||||| ||||||||||| |||||
Sbjct 823 AACAAAGAAACCGGATGGGATACACCAATCCACGTGGATGCGGCAAGTGGAGGATTCATT 882
Query 776 GCTCCATTTATCTATCCTGAATTGGAATGGGACTTTAGACTTCCTTTGGTTAAGAGCATC 835
|| || ||| | ||||| |||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 883 GCACCGTTTTTGTATCCGGAATTGGAATGGGACTTTAGACTTCCCTTGGTGAAGAGTATC 942
Query 836 AACGTGAGTGGTCACAAGTATGGACTTGTCTATGCTGGTATTGGTTGGGTCG-TGTGGAG 894
|| |||||||||||||||||||||||||| || || || ||||||||||| | | |||||
Sbjct 943 AATGTGAGTGGTCACAAGTATGGACTTGTGTACGCAGGGATTGGTTGGGT-GATCTGGAG 1001
Query 895 GG-CATCAGAGGATTTGCCTGAAGAGCTTATCTTTCATATTAACTATCTTGGTTCTGATC 953
|| ||||||||||||||| || || ||||| ||||| || ||||||||| |||| |
Sbjct 1002 AAACAA-AGAGGATTTGCCTGAGGAACTCATCTTCCATATCAATTATCTTGGTGCTGACC 1060
Query 954 AACCCAC-TTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATACTAT 1012
||||||| ||| ||||||||||||||||| || || || ||| | ||||||||||||||
Sbjct 1061 AACCCACCTTT-ACTCTCAATTTCTCCAAAGGTTCAAGTCAAGTCATTGCTCAATACTAC 1119
Query 1013 CAACTCATTCGTCTTGGGTT-CGAGGGGTACAAGAA-TGTGATGGAGAATTGCATAGAGA 1070
||||| || || ||||| |||||| |||| ||| ||||||||||||||||| |||||
Sbjct 1120 CAACTTATCCGA-TTGGGCCACGAGGGTTACA-GAAATGTGATGGAGAATTGCAGAGAGA 1177
Query 1071 ACATGGTGGTTCTCAAAG-AAGGGA-TAGAGAAAACAGAGCGTTTCAACATAGTTTCCAA 1128
| ||| | || || || | |||| | | ||||| ||||| | |||||||| || || ||
Sbjct 1178 ATATGATCGTCCT-AAGGGAAGG-ACTTGAGAAGACAGAAAGGTTCAACATCGTCTCAAA 1235
Query 1129 GGACCAAGGAGTGCCAGTCGTAGCCTTCTCTCTC-AAGGACCAT-AGTT-TCCACAAC-G 1184
|||| | ||||||||| | || || ||||| || || || | || | || ||| | |
Sbjct 1236 GGACGAGGGAGTGCCACTTGTCGCTTTCTC-CTTGAAAGAT-AGCAGCTGTC-ACA-CTG 1291
Query 1185 AGTTCGAGATCTCTGAGATGCTACGCCGTTTTGGATGGATCGTCCCGGCTTACACTATGC 1244
||||||| ||||| || ||||| ||| | | ||||||||| || ||||| ||||| ||||
Sbjct 1292 AGTTCGAAATCTCCGACATGCTTCGCAGGTATGGATGGATAGTGCCGGCCTACACAATGC 1351
Query 1245 CTGCGGATGCGCAACACATCACGGTTCTACGTGTTGTCATCAGGGAAGATTTCTCAAGAA 1304
|| | |||| ||||||||||| ||||| ||||| || ||||| ||||||||||| ||||
Sbjct 1352 CTCCAAATGCACAACACATCACTGTTCTTCGTGTGGTTATCAGAGAAGATTTCTCGAGAA 1411
Query 1305 CACTCGCGGAAAGACTTGT-AGTCGATATTGTGAAGGTGCTTCACGAGCTAGAT-ACCTT 1362
||||||| || |||||||| | ||||||| | ||| ||| | | ||||| ||| | |||
Sbjct 1412 CACTCGCTGAGAGACTTGTGA-TCGATATAGAGAAAGTGATGCGTGAGCTCGATGAGCTT 1470
Query 1363 GCCTTC 1368
|||||
Sbjct 1471 -CCTTC 1475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75501619680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5