BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925746

Length=1549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G01080.1 | Symbols:  | Beta-galactosidase related protein | ...  52.8    1e-05
  AT1G30784.1 | Symbols:  | Pseudogene of AT5G01080; beta-galacto...  52.8    1e-05


> AT5G01080.1 | Symbols:  | Beta-galactosidase related protein 
| chr5:28532-29086 REVERSE LENGTH=555
Length=555

 Score = 52.8 bits (28),  Expect = 1e-05
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  904  TTAAAAGCTTGAAGAAGAACGGCATTAT  931
            ||||||||||||||||||||||||||||
Sbjct  221  TTAAAAGCTTGAAGAAGAACGGCATTAT  248


> AT1G30784.1 | Symbols:  | Pseudogene of AT5G01080; beta-galactosidase 
| chr1:10929536-10930090 REVERSE LENGTH=555
Length=555

 Score = 52.8 bits (28),  Expect = 1e-05
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  904  TTAAAAGCTTGAAGAAGAACGGCATTAT  931
            ||||||||||||||||||||||||||||
Sbjct  221  TTAAAAGCTTGAAGAAGAACGGCATTAT  248



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 76455430035


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5