BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925747
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66060.1 | Symbols: | Family of unknown function (DUF577) |... 1210 0.0
AT1G66000.1 | Symbols: | Family of unknown function (DUF577) |... 1160 0.0
> AT1G66060.1 | Symbols: | Family of unknown function (DUF577)
| chr1:24593915-24595544 REVERSE LENGTH=1630
Length=1630
Score = 1210 bits (655), Expect = 0.0
Identities = 909/1030 (88%), Gaps = 24/1030 (2%)
Strand=Plus/Plus
Query 1 CTTCCCATGGATAAGCGAAAGATGCCGACGAAGCAACCAACCTCCGAAGAGTTCAACAAA 60
|||||||||||||| | ||| | || ||||||||||||||||| |||| |||| ||||
Sbjct 407 CTTCCCATGGATAATC---AGAAGTCGCCGAAGCAACCAACCTCCCAAGACTTCACCAAA 463
Query 61 GCCGCCTTCAAGCTTCTTGCGAATCCCCACATCGAACCGACGGTGGAGTTCATCGCCGCC 120
|||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||
Sbjct 464 GCCGCCTTCAAGCTTCTTGCGAATCCCCACGTTGAACCGACGGTGGAATTCATCGCCGCC 523
Query 121 CTCATAAATCCA-CGGAAATATCAAGAAGAT--AG--A--AAGTTCTTCCGTTTTTGCGT 173
|||| ||| ||| |||| | ||| ||||||| || | |||||||||||||| |||||
Sbjct 524 CTCACAAAGCCACCGGAGA-ATCCAGAAGATAAAGACATCAAGTTCTTCCGTTTCTGCGT 582
Query 174 CGCCAATTACCCGGGATGCTTCTCCGTCAAGCTCATGTGTGTCT-TCGCCTCGAAAGAGC 232
||||||||||||||||||||||||| ||||||||||| |||||| | ||||||| || |
Sbjct 583 CGCCAATTACCCGGGATGCTTCTCCCTCAAGCTCATGCGTGTCTAT-TCCTCGAATGATC 641
Query 233 CACGTGTCTCTTACGAGATCAGAGAGAGTGCAATGAGGTTTCTCCACGGTATCTTCATCA 292
|||| ||| | ||| |||||||||||| ||| |||| || ||||||| |||||||||||
Sbjct 642 CACGAGTCCCATACCAGATCAGAGAGATTGCGATGATATTACTCCACGTTATCTTCATCA 701
Query 293 AAGAAGAAGCTTCTATGGATTTTGAAGTGGTTCAGGTA-TTCTCGACTTTACTCATATCT 351
||||||||| ||| || |||| | ||||||||| || || ||| || ||||||||||
Sbjct 702 TAGAAGAAGCCTCTTTGAATTTGGCAGTGGTTCACATACTT-TCGCCTATACTCATATCA 760
Query 352 TGCCTTGAAGAACAAGTTATCTCGGAA-ACCAGTTTCAAGACTCTTTGCTTGCTCGTGAA 410
||||||||||||||||||||||| ||| | |||||| |||| ||||| | ||||||||||
Sbjct 761 TGCCTTGAAGAACAAGTTATCTC-GAACAACAGTTTAAAGATTCTTTCCATGCTCGTGAA 819
Query 411 GCGTGTCGCTTTCGAGATATTCACCATTCAAGAA-ACAACGTGGCATGGCTTGCTTAAGT 469
||||||||||||||||||||||||||||| ||| | ||||||| ||| | ||| | |||
Sbjct 820 CCGTGTCGCTTTCGAGATATTCACCATTCAGGAAGA-AACGTGGTATGACCTGCGTGAGT 878
Query 470 TTATCTCGTCTAGAGCGGAA-CAAGAGTTTGCGAAAGCGGTTTCCGTGTTCAAGAGCTTG 528
|||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 879 TTATCTCGTCTAAAGCGGAATC-AGAGTTTGCGAAAGCGGTTTCCGTGTTCAAGAGCTTG 937
Query 529 TCGATGCCCTTGGATGAAGAGGAGTTTCTGATTCCTCTAATGGAGAATCTTCTTCCAGCG 588
|||||||| ||||||| |||||||||| |||||||||| ||||| |||||||||||||||
Sbjct 938 TCGATGCCTTTGGATGGAGAGGAGTTTTTGATTCCTCTCATGGATAATCTTCTTCCAGCG 997
Query 589 ATCTTGAAACGTTTAGGTGACAAAGAGGAAGAGAGTTCGAACCAGTGGGGTTTGGCGTTT 648
||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||| |||
Sbjct 998 ATCTTAAAACGTTTAGGTAACAAAGAGGAAGAGAGTTCGAGCCAGTGGGGTTTGGCCTTT 1057
Query 649 GTGGGTGGTTTCTGTGCGGCGGTTCACTTGTTGGAGACGAGACGTGTTGCTTTAGTGGAG 708
|||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||
Sbjct 1058 GTGGGTGGTTTCTGTGCGGCGGTTCACTTGTTGGAGACGACACGTGTTGATTTGGTGGAG 1117
Query 709 AATCTTGCTAATGAGATGTTGAAATCGGTGAACAGAGGAATGGAATTAGGGTTTCTTTTG 768
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1118 AATCTTGCGAATGAGATGTTGAAATCGGTGAAGAGAGGAATGGAATTAGGGTTTCTTGGG 1177
Query 769 AAAGCTCTTACGGATCTTGAAATCGCTATAGTGGAGCAGTTATGGTGGTATTGTACTACA 828
|||||||||| ||| |||||| |||| ||||||| || |||||||||||||||||||||
Sbjct 1178 AAAGCTCTTAGGGAAGTTGAAACCGCTGTAGTGGAACAATTATGGTGGTATTGTACTACA 1237
Query 829 GAGTTTAAATTCGTCTTGGGTTTGATTCAG-AGGATTGATGCGATTATCACTGAGAAGAC 887
|| || | |||||| |||||||||||| || ||||||||||||||| |||||||| ||||
Sbjct 1238 GAATTCAGATTCGTATTGGGTTTGATT-AGTAGGATTGATGCGATTGTCACTGAGGAGAC 1296
Query 888 AGCGAAGAATGTGTTGGAGAGGATTACGATGGTTGTGAAGAAGAAGATGCTTGAATATGT 947
|||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1297 AGCGAAGAATGTGTTGCAAAGGATTAAGATAGTTGTGAAGAAGAAGATGCTTGAATATGT 1356
Query 948 TGGAGAGATTGATAA-TGGTGATGAAGATTGGCTTAATCAGCGCCTTTGAGTTTGGTTGC 1006
| |||||||| ||| |||||| ||||||||||||||| || ||| |||| ||||| |||
Sbjct 1357 TTAAGAGATTGGTAAATGGTGACGAAGATTGGCTTAATGAGAGCCATTGAATTTGGATGC 1416
Query 1007 TTCCTGCCCA 1016
||| ||||||
Sbjct 1417 TTCTTGCCCA 1426
> AT1G66000.1 | Symbols: | Family of unknown function (DUF577)
| chr1:24574344-24575438 FORWARD LENGTH=1095
Length=1095
Score = 1160 bits (628), Expect = 0.0
Identities = 853/961 (89%), Gaps = 18/961 (2%)
Strand=Plus/Plus
Query 29 CGAAGCAACCAACCTCCGAAGAGTTCAACAAAGCCGCCTTCAAGCTTCTTGCGAATCCCC 88
||||||||||||||||| |||| |||| |||| ||||||||||||||||||| ||||| |
Sbjct 20 CGAAGCAACCAACCTCCCAAGACTTCACCAAATCCGCCTTCAAGCTTCTTGCAAATCCTC 79
Query 89 ACATCGAACCGACGGTGGAGTTCATCGCCGCCCTCATAAATCCA-CGGAAATATCAAGAA 147
|||| |||||||||||||| |||||||||||||||| ||| ||| |||| | ||| ||||
Sbjct 80 ACATTGAACCGACGGTGGAATTCATCGCCGCCCTCACAAAGCCACCGGAGA-ATCCAGAA 138
Query 148 GAT--AG--A--AAGTTCTTCCGTTTTTGCGTCGCCAATTACCCGGGATGCTTCTCCGTC 201
||| || | |||||||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 139 GATAAAGACATCAAGTTCTTTTGTTTCTGCGTCGCCAATTACCCGGGATGCTTCTCCCTC 198
Query 202 AAGCTCATGTGTGTCTTCGCCTCGAAAGAGCCACGTGTCTCTTACGAGATCAGAGAGAGT 261
||||||||| |||||| | |||||||||||||||| ||| | ||||||||||||||| ||
Sbjct 199 AAGCTCATGCGTGTCTACTCCTCGAAAGAGCCACGCGTCCCATACGAGATCAGAGAGGGT 258
Query 262 GCAATGAGGTTTCTCCACGGTATCTTCATCAAAGAAGAAG-CTTCTATGGATTTTGAAGT 320
|| ||||| | |||||||| ||||||||||| |||||||| || || || |||| | |||
Sbjct 259 GCGATGAGATGTCTCCACGTTATCTTCATCATAGAAGAAGCCTCCT-TGAATTTAGCAGT 317
Query 321 GGTTCAGGTATTCTCGACTTTACTCATATCTTGCCTTGAAGAACAAGTTATCTCGGAAAC 380
|||||| || ||||| || |||||||||| |||||||||||||||||| ||||||| ||
Sbjct 318 GGTTCACATACTCTCGCCTATACTCATATCATGCCTTGAAGAACAAGTTGTCTCGGACAC 377
Query 381 CAGTTTCAAGACTCTTTGC-TTGCTCGTGAAGCGTGTCGCTTTCGAGATATTCACCATTC 439
|||||| |||| ||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 378 CAGTTTAAAGATTCTTT-CAATGCTCGTGAACCGTGTCGCTTTCGAGATATTCACCATTC 436
Query 440 AAGAA-ACAACGTGGCATGGCTTGCTTAAGTTTATCTCGTCTAGAGCGGAA-CAAGAGTT 497
| ||| | ||||||| ||| | ||| | ||||||||||||||| ||||||| | ||||||
Sbjct 437 AGGAAGA-AACGTGGTATGACCTGCGTGAGTTTATCTCGTCTAAAGCGGAATC-AGAGTT 494
Query 498 TGCGAAAGCGGTTTCCGTGTTCAAGAGCTTGTCGATGCCCTTGGATGAAGAGGAGTTTCT 557
|| ||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| |
Sbjct 495 TGTGAAAGTGGTTTCCGTGTTCAAGAGCTTGTCGATGCCTTTGGATGGAGAGGAGTTTTT 554
Query 558 GATTCCTCTAATGGAGAATCTTCTTCCAGCGATCTTGAAACGTTTAGGTGACAAAGAGGA 617
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 555 GATTCCTCTCATGGAGAATCTTCTTCCAGCGATCTTGAAACGTTTAGGTGACAACGAGGA 614
Query 618 AGAGAGTTCGAACCAGTGGGGTTTGGCGTTTGTGGGTGGTTTCTGTGCGGCGGTTCACTT 677
||| |||||| |||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 615 AGATAGTTCGGGCCAGTGGGGTTTAGCGTTTGTGGGTGGTTTCTGTGCGGCTGTTCACTT 674
Query 678 GTTGGAGACGAGACGTGTTGCTTTAGTGGAGAATCTTGCTAATGAGATGTTGAAATCGGT 737
||||||||||| |||||||| ||| |||||||||||||| ||||||||||||||||||||
Sbjct 675 GTTGGAGACGACACGTGTTGATTTGGTGGAGAATCTTGCGAATGAGATGTTGAAATCGGT 734
Query 738 GAACAGAGGAATGGAATTAGGGTTTCTTTTGAAAGCTCTTACGGATCTTGAAATCGCTAT 797
||| |||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |
Sbjct 735 GAAGAGAGGAATGGAATTAGGGTTTCTTGGGAAAGCTCTTAGGGATGTTGAAATCGCTGT 794
Query 798 AGTGGAGCAGTTATGGTGGTATTGTACTACAGAGTTTAAATTCGTCTTGGGTTTGATTCA 857
|||||| || |||||||||||||||||||||||||| | |||||| ||||||||||||||
Sbjct 795 AGTGGAACAATTATGGTGGTATTGTACTACAGAGTTCAGATTCGTTTTGGGTTTGATTCA 854
Query 858 GAGGATTGATGCGATTATCACTGAGAAGACAGCGAAGAATGTGTTGGAGAGGATTACGAT 917
||| |||| |||||| |||||||| ||||| | |||||||||||| ||||||||| |||
Sbjct 855 AAGGGTTGAGGCGATTGTCACTGAGGAGACAACAAAGAATGTGTTGCAGAGGATTAAGAT 914
Query 918 GGTTGTGAAGAAGAAGATGCTTGAATATG-TTGGAGAGATTGATAATGGTGATGAAGATT 976
|||||||||||||||||||||||||||| || |||||||||||||||||| |||||||
Sbjct 915 AGTTGTGAAGAAGAAGATGCTTGAATATGCTTA-AGAGATTGATAATGGTGACGAAGATT 973
Query 977 G 977
|
Sbjct 974 G 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49782039677
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5