BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925757
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66130.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1668 0.0
> AT1G66130.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr1:24614962-24616930 FORWARD LENGTH=1361
Length=1361
Score = 1668 bits (903), Expect = 0.0
Identities = 1062/1138 (93%), Gaps = 14/1138 (1%)
Strand=Plus/Plus
Query 4 aaaaa-aaaa-aCACACCACAATGAGTGACACTAAAACGGTGCGTTTTGGTCTTCTTGGA 61
||||| |||| | |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAAAACAAAAGA-ACACAAC-ATGAGTGACACTAAAACGGTGCGTTTTGGTCTTCTTGGA 117
Query 62 TGCATCAGATTCGCATCAAAGTTTGTAAGAACAGTAACACAATCCTCAAACGCCGTCATT 121
|| |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 118 TGTATCAGATTCGCATCAAAGTTCGTCAGAACAGTAACAGAATCCTCAAACGCCGTCATT 177
Query 122 ATCGCCATCAGCGATCCATCACTCGAAACAGCAAAAACCTTCGCCGCCACCAACAATTTA 181
||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct 178 ATCGCCATCAGCGATCCATCACTCGAAACCGCAAAAACCTTCGCCACCGGGAACAATTTA 237
Query 182 TCGCCGGAAACCGTCATAATATACGGAAGCTACGAAGAACTACTAAACGATGCCAACGTT 241
|||||||| ||||||| ||||||||||||||||| || || |||||||||| |||||
Sbjct 238 TCGCCGGAGACCGTCACGATATACGGAAGCTACGAGGAGCTTTTAAACGATGCAAACGTC 297
Query 242 GACGCCGTTTACTTGACGATGCCGGTGACACAACGAGGGAAATGGGCGGTGACGGCGGCA 301
||||||||||||||||||||||||||||| ||||||| || |||||| ||||||||||||
Sbjct 298 GACGCCGTTTACTTGACGATGCCGGTGACGCAACGAGCGAGATGGGCTGTGACGGCGGCA 357
Query 302 GAGAACAAGAAGCATGTTCTTGTTGAGAAACCACCGGCTCAAGACGCGACGGAGCTGGAG 361
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 358 GAGAAGAAGAAGCATGTTCTTGTTGAGAAACCACCAGCTCAAGACGCGACGGAGCTGGAG 417
Query 362 AAGATTGTGGAGGCGTGTGAATCTAACGGTGTTCAGTTTATGGACGGTACGATTTGGTTG 421
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 418 AAGATTGTGGAGGCGTGTGAATATAACGGTGTTCAGTTTATGGACGGTACGATTTGGTTG 477
Query 422 CATCATCAACGGACGGTTAAGATTAGTGATACGATGTTTGATTCTGGATTGCTTGGAGAT 481
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 478 CATCATCAACGGACGGTTAAGATTAGAGATACGATGTTTGATTCTGGATTGCTTGGAGAT 537
Query 482 GTTCGCCACATGTATAGCACGATGACTACTCCGGTACCGGAGCAAGTGCTGGAAAGACTG 541
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 538 GTTCGCCACATGTATAGCACGATGACCACTCCGGTACCGGAGCAAGTATTGGAAAGACTG 597
Query 542 ACTAAAGAAGCTATGGGTTTAGCCGGAGCTATAGGAGAGCTTGGGTGGTACCCTATAGGT 601
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 598 ACTAAAGAAGCTATGGGTTTAGCCGGAGCTATCGGAGAGCTTGGATGGTATCCTATAGGC 657
Query 602 GCAGCTTTATGGGCTATGTCTTACCAAATGCCGATATCGGTTAGGGCTCTTCCCTCCTCT 661
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 658 GCAGCTTTGTGGGCTATGTCTTACCAAATGCCGATATCGGTCAGGGCTCTTCCCTCCTCT 717
Query 662 GTCTCCACAAACTCGGTTGGCACTATCTTGTCCTGCACTGCCTCTCTTGAGTTCGGTTCA 721
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 718 GTCTCCACAAACTCGGTTGGCACTATCTTGTCCTGCACTGCCTCTCTTCAGTTCGGTTCA 777
Query 722 ACCGCAACC------GCAATTGTCCATTGCTCTTTCCTCTCTCAACTTTCAACCGACTTA 775
|| |||||| ||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 778 ACTGCAACCACAACCGCAATCGTTCATTGCTCTTTCCTCTCTCAACTTTCAACGGACTTA 837
Query 776 GCTATCTCAGGATCAAAAGGGTCGATTCAAATGAATGACTATGTGATACCCTACAAGGAG 835
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GCTATCTCAGGCTCAAAAGGGTCGATTCAAATGAATGACTATGTGATACCCTACAAGGAG 897
Query 836 GACACAGCTTGGTTCGAATACACATGTGGTGCGAAGTTTGTGGACATGGACATTGGTTGG 895
|||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 898 GACAAAGCTTGGTTCGAATACACAAGTGGTGCGAAGTTTGTGGACATGCACATTGGTTGG 957
Query 896 AATGTGACACCGGAGAAAGTTACAGTGGACTGTGGCGGAACTGCGGATACGCAAGAGGCA 955
|||||||| || |||| |||||||||||||||| |||||||| |||| ||||||||||||
Sbjct 958 AATGTGACGCCAGAGAGAGTTACAGTGGACTGTAGCGGAACTCCGGAGACGCAAGAGGCA 1017
Query 956 ATGATGCTGAGAGAGTTCACGCGGCTTGTCGAAGGAATCAAGCGGGGCGATTTAGAGGCT 1015
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 1018 ATGATGCTGAGAGAGTTCACGCGGCTTGTGGAAGGAATCAAGCGTGGCGACTTAGAGGCT 1077
Query 1016 GATCGTAGGTGGGCCGAGAT-TA-GTAAGAAGACGCAGTTGGTCGTTGATGCTGTGAAGA 1073
|||||||||||| ||| ||| || ||||||||||||||||| ||||||||||||| ||||
Sbjct 1078 GATCGTAGGTGG-CCG-GATATAAGTAAGAAGACGCAGTTGATCGTTGATGCTGTAAAGA 1135
Query 1074 AATCTGTTGACATTAATTGTGAAGTGGTTCATCTGTAAAACTTGTTGATATTTTCTGC 1131
|||||||||| ||| |||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1136 AATCTGTTGATATTGGTTGTGAAGTGGTTCATCTGTGAAACTTGTTGAAATCTTCTGC 1193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55471602225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5