BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925760
Length=329
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12830.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 385 2e-106
> AT4G12830.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:7531141-7533587 FORWARD LENGTH=1490
Length=1490
Score = 385 bits (208), Expect = 2e-106
Identities = 233/245 (95%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 21 AAAATGGCGGTTCATATTCACAACCCTAACTTTTTCAACACTCATCATCTCCGATCATCT 80
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 46 AAAATGGCGGTTCATATTCACAACCCTAACTTTTTCCACACTCATCATCTCCGAGCATCT 105
Query 81 CTTACTTCT-CCTTCTCCTTCACCTTCCTCATATCTCTTTCATAGACACTCTGCTTCAAA 139
||||||||| || ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 106 CTTACTTCTGCC-TCTGCATCACCTTCCTCATATCTCTTTCATAGACACTCTGCTTCAAA 164
Query 140 ATATCCAAACTTCATCTGCAAATCCAATAACAAAGATGACTATCTCATTGATGCTCCTGT 199
||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 GTATCCTAGCTTCCTCTGCAAATCCAATAACAAAGATGACTATCTCATTGATGCTCCTGT 224
Query 200 TTCTGTTGGAGATGGATTCTCTTTTAGTGAAGGGAAGTATTCGGATCAACCGAGTCCATC 259
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 225 TTCTGTTGGAGATGGATTCTCTTTTAGTGGAGGGAAGTATTCGGATCAACCGAGTCCATC 284
Query 260 AAATG 264
| |||
Sbjct 285 AGATG 289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15331663445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5