BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925761
Length=343
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66145.1 | Symbols: CLE18 | CLAVATA3/ESR-RELATED 18 | chr1:2... 248 2e-65
> AT1G66145.1 | Symbols: CLE18 | CLAVATA3/ESR-RELATED 18 | chr1:24628530-24628835
REVERSE LENGTH=306
Length=306
Score = 248 bits (134), Expect = 2e-65
Identities = 238/285 (84%), Gaps = 19/285 (7%)
Strand=Plus/Plus
Query 51 CTAATCTTTTTCCTAATAACGTCGTCGGTGGCTGCTATTCTTGAAGTCCCATCTTTGATT 110
|||||||| ||||||||||||||||| | | |||||||| ||||| |||||| ||||||
Sbjct 40 CTAATCTTGTTCCTAATAACGTCGTCTATTGTTGCTATTCGTGAAGACCCATCGTTGATT 99
Query 111 GGAGTCGAGAGAAAGATCCCAACAGGTCCGGATCTTTTACATAATGCGCCTCATCATAAT 170
||||| || ||| |||||||||||||||| |||| | | | | | ||||||
Sbjct 100 GGAGTAGACAGACAGATCCCAACAGGTCCTGATC-----C-T--T-----T-A-CATAAT 144
Query 171 CCTCATCAGCCTTCACCAGGACATCGTCATTGGATCGGAGTCGAGGaaaaaaaTATCGAA 230
|||| ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct 145 CCTCCTCAGCCTTCACCAAAACATCATCATTGGATCGGAGTCGAGGAAAACAATATCGAC 204
Query 231 TGGTCTTTGAATTATGTGGATTATGATTCTCCTCATCCCTACATAAACCTATACAT-AGT 289
|||||| |||||||||||||||||| |||| |||| | ||||| ||||||||| | |
Sbjct 205 CGGTCTTGGAATTATGTGGATTATGAATCTCATCAT-GC-ACATAGTCCTATACATAACT 262
Query 290 GCTCCTCAGCCTTCACCATTATATCGTCATTTGATTGGAGTCTAG 334
||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 263 -CTCCTGAGCCTGCACCATTATATCGTCATTTGATTGGAGTCTAG 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16035411931
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5