BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925763
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66160.1 | Symbols: ATCMPG1, CMPG1 | CYS, MET, PRO, and GLY ... 1999 0.0
> AT1G66160.1 | Symbols: ATCMPG1, CMPG1 | CYS, MET, PRO, and GLY
protein 1 | chr1:24637196-24638608 FORWARD LENGTH=1413
Length=1413
Score = 1999 bits (1082), Expect = 0.0
Identities = 1256/1341 (94%), Gaps = 8/1341 (1%)
Strand=Plus/Plus
Query 1 TTAGCAAGAGACGGTCAAATAATGGGACTTTCATTGAGAGTGAGACGTCGTGGAGGAAGT 60
|||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTAGTAATAAACGGTCAAAGAATGGGACTTTCATTGAGAGTGAGACGTCGTGGAGGAAGT 61
Query 61 GGAAGCAAGAAGGAGATTATTCCGGTGACAAGTTGCTCGGAGGAAGTGGAGATAACGATC 120
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 62 GTTAGCAAGAAAGAGATCATTCCGGTGACAAGTTGCTCGGAGGAAGTGGAGATAACCATA 121
Query 121 CCGTCGCAGTTTCAATGTCCGATTTCTTACGAGCTAATGAAAGATCCGGTGATTATTGCT 180
|| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 122 CCATCGCAGTTTCAATGTCCGATATCTTACGAGCTAATGAAGGATCCGGTGATTATTGCC 181
Query 181 TCGGGGATCACTTACGACCGCGAAAACATCGAGAAGTGGTTCGAGTCCGGGTACCAAACT 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TCGGGGATCACTTACGATCGCGAAAACATCGAGAAGTGGTTCGAGTCCGGGTACCAAACT 241
Query 241 TGTCCCGTTACTAACACGGTTTTGACAAGTTTGGAGCAGATTCCGAATCATACGATTCGG 300
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 242 TGTCCCGTTACAAACACGGTTTTGACAAGTTTGGAACAGATTCCGAACCATACGATTCGG 301
Query 301 AGGATGATTCAAGGTTGGTGCGGGTCGTCACTAGGCGGCGGGGTTGAGA-GAATCCCGAC 359
|||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 302 AGGATGATTCAAGGTTGGTGCGGGTCGTCACTAGGCGGCGGGATTGA-ACGAATCCCGAC 360
Query 360 GCCACGTGTACCCGTGACGAGTCATCAAGTCTCCGAGATTTGTGGGAGGTTATCCGCTGC 419
||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GCCTCGTGTACCCGTGACCAGTCATCAAGTCTCCGAGATTTGTGAGAGGTTATCCGCTGC 420
Query 420 TACGCGGCGTGGAGACTACGCCGCGTGCA-GCGAGATGGTTAGGAAGTTGAAGATA-TTG 477
||||||||||||||||||||||||||||| | |||||||||| |||| ||| || | | |
Sbjct 421 TACGCGGCGTGGAGACTACGCCGCGTGCATG-GAGATGGTTACGAAGATGACGAGACTAG 479
Query 478 GAAAAAGAGAGCGAGAGGAACCGAAAATGCGTTAAGGAAAACGGCGCCGGATTGGTTCTT 537
| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 480 G-AAAAGAGAGCGAGAGGAATCGAAAATGCGTTAAGGAAAACGGCGCGGGATTGGTTCTT 538
Query 538 TGCGTTTGCTTCGACGCGTTTTCCGAAAACGCAAACGCGTCACTATTATTGGAAGAGATT 597
||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||| |
Sbjct 539 TGCGTTTGCTTCGACGCGTTTTCCGAAAACGCAAATGCGTCATTATTATTGGAGGAGACT 598
Query 598 GTGTCTGTGCTGACGTGGATGCTTCCCATTGGTTCAGAAGGTCAATCCAAACTCACCACT 657
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 599 GTGTCTGTGCTGACGTGGATGCTTCCCATTGGTTTAGAAGGTCAATCCAAACTCACCACG 658
Query 658 AAGTCGTCGTTTAATCGTTTAGTGGAACTTTTGAGAAACGGAGATCAAAACGCACCGTTT 717
| ||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||
Sbjct 659 ACGTCGTCGTTTAATCGTTTAGTGGAACTGTTGAGAAATGGTGATCAAAACGCTGCGTTT 718
Query 718 GTGATCAAAGAGCTTCTTGAGCTTAACGTAGCTCACGTTCACGCGTTAACAAAGATTAAT 777
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 719 TTGATAAAAGAGCTTCTTGAGCTTAACGTAACTCACGTTCACGCGTTAACAAAGATCAAT 778
Query 778 AGCGTCGAAGAAGCGTTCTTGAAATCGCTTAATCGCGATTCTACATGCGCCAACTCATTA 837
||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||| |||
Sbjct 779 GGCGTCCAAGAAGCGTTCATGAAATCGATTAATCGCGATTCTACATGCGTCAACTCGTTA 838
Query 838 ACATCAATCCACCACATGATCTTGACAAATCAAGAAACCGTTTCAAGGTTTCTTGAATTG 897
| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 839 ATATCAATCCACCATATGATCTTGACAAATCAAGAAACCGTATCAAGGTTTCTTGAATTG 898
Query 898 GATCTTGTGAATACAACAGTGGAGATGTTAGTTGATTCTGAAAACAGTGTTTGTGAGAAA 957
||||||||||||| ||||||||||||| |||| ||||| |||||||| ||||| ||||||
Sbjct 899 GATCTTGTGAATATAACAGTGGAGATGCTAGTGGATTCAGAAAACAGCGTTTGCGAGAAA 958
Query 958 GCGTTAACGGTTTTAAACGCT-ATTTGTGAAACTAAAGAAGGAAGAGAGAAAGTGAGAAG 1016
||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 959 GCGTTAACGGTATTAAACG-TGATTTGTGAAACTAAAGAAGGAAGAGAGAAAGTGAGAAG 1017
Query 1017 AAACGAGTTAGTGATACCGATATTGGTGAAGAAGATTTTGAAGATTACAGAGAAGAAAGA 1076
|||| || | ||||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct 1018 AAACAAGCTGGTGATACCGATTTTGGTGAAGAAGATTTTGAAGATTTCTGAGAAGAAAGA 1077
Query 1077 TTTGGTTTCTGTGATGTGGAAGATTTGTAAAAGTGGAGATGGGTATGAAGTTGAAGAAGC 1136
|||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct 1078 TTTGGTTTCTGTGATGTGGAAGGTTTGTAAAAGTGGTGATGGGTCTGAAGTTGAAGAAGC 1137
Query 1137 GTTGAGATTAGGTGCGTTTAAGAAGCTTGTTGTGATGTTACAAGTTGGATGTGGTGAAGA 1196
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1138 GTTGAGATTAGGTGCGTTTAAGAAGCTTGTTGTCATGTTACAAGTTGGATGTGGTGAAGG 1197
Query 1197 AACAAAGGAGAAAGTTACTGAGTTGTTGAAGATGATGAATAAAGTTATGAAGATGAATGG 1256
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AACTAAGGAGAAAGTTACAGAGTTGTTGAAGATGATGAATAAAGTTATGAAGATGAATGG 1257
Query 1257 TTTTGTTGATCGTTCTGATTCTTCTTCTATTGAGTTTAAACATGTTAAGAAACCATTTTG 1316
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1258 TTTTGTTGATCGTTCTTATTCTTCTTCAATTGAGTTTAAACATGTTAAGAAACCATTTTA 1317
Query 1317 ATACATTTTGTATAGAGGAAA 1337
|||||||||||||||||||||
Sbjct 1318 ATACATTTTGTATAGAGGAAA 1338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65812914495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5