BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925764
Length=2159
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66170.1 | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfa... 2955 0.0
> AT1G66170.1 | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfamily
protein | chr1:24638685-24641494 REVERSE LENGTH=2495
Length=2495
Score = 2955 bits (1600), Expect = 0.0
Identities = 1982/2167 (91%), Gaps = 24/2167 (1%)
Strand=Plus/Plus
Query 1 GAACTCAATCATCACTCAATAATGCCAGTCCCAATCATCGAAACTTGCCGTAAGAGAAAA 60
|||||| |||||||||||| |||||||||||||||||||||||| || ||||||||||||
Sbjct 252 GAACTCTATCATCACTCAAAAATGCCAGTCCCAATCATCGAAACGTGTCGTAAGAGAAAA 311
Query 61 CGAAAGCCGAGAGTTTACAATCTTCAACGATTCGGAGAAGATGGGTTTCCGATACACCGG 120
|| ||||| | |||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 312 CGGAAGCCAAAAGTTTACAATCTACAACGATTCGGGGAAGATGGGTTTCCGATACAACGG 371
Query 121 AACGGAACTTTCCGGGATCAAATTAGGGtttttttACGGGA-TGGTGCGGAGGTTGAAGA 179
|||||| |||| || |||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 372 AACGGAGCTTTTCGCGATCAAATTAGGGTTTTTTTACGGGACT-GTGCGGAGATTGAAGA 430
Query 180 TTATGATCTCCGTGGTATGCCTGTGTGGTGTACTCTCTTT-AGCCATGAGACGAAGAGTT 238
||||||| |||| |||||| |||||||||||||||| ||| |||||||||||||||||||
Sbjct 431 TTATGATATCCGCGGTATGACTGTGTGGTGTACTCT-TTTAAGCCATGAGACGAAGAGTT 489
Query 239 CTCTGATTCCACTT-TACATTGTTGAAGAAAATGTGATTCACTCACCAGAACCATACTGC 297
|||||||||| || |||||||||||||||||||||| || ||| | ||||| || |||
Sbjct 490 CTCTGATTCC-GTTGTACATTGTTGAAGAAAATGTGAAACATTCATCGGAACCCTATTGC 548
Query 298 GATCACTGTCGATGCACAGGTTGGAGTAATCATTTTGTGTCCAAGAGAAAGTACCACTTC 357
||||||||||| ||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct 549 GATCACTGTCGTTGCACAGGTTGGAGTAACCATTTTGTGTCGAAGAGAAAATATCACTTC 608
Query 358 ATTATTCCGAATGATTCTGAGTGGAGTTTGCCATTAGAAGAGGATGCTTTTGATTTTCAA 417
|||||||||| |||| ||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 609 ATTATTCCGATTGATACTGAGTGGAGTTTGCCATTAGAAGATGATGCTTTTGATTCTCAA 668
Query 418 ACTCATGCTTTACATGGTTTGATTCATTGTAATGGTTTTGGACATTTGTTATGTGTCAAT 477
| |||| ||||||||||||||||||||| ||||||||||| |||||| |||||||||||
Sbjct 669 TCCCATGTTTTACATGGTTTGATTCATTGCAATGGTTTTGGTCATTTGGTATGTGTCAAT 728
Query 478 GGTATGGAAGGAGGTTCAAAGTACTTATGCGGAAGAGAGATTGTGGACTTTTGGGATCGG 537
||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 GGTATGGAAAGTGGTTCTAAGTACTTATGCGGAAGAGAGATTGTGGACTTTTGGGATCGG 788
Query 538 ATTTGTAATAGTCTTGGAGCAAGGATGATTACGGTTGAAGATTTGTCTAAGAAGAGAG-C 596
||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| | |
Sbjct 789 CTTTGTAATAGTCTCGGAGCAAGGATGATTACTGTTGAAGATTTGGCTAAGAAGAG-GTC 847
Query 597 TTTGGAATTGAGGTTGTTGTATGGTGTTGCTTATGGTCACTCTTGGTTTGGTCGATGGGG 656
| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 848 TGTGGAACTGAGGTTGTTGTATGGTGTTGCTTATGGTCACTCTTGGTTTGGAAGATGGGG 907
Query 657 ATATAAGTTTTGTCGTGGGAGTTATGGTGTGAGTAAGAGTGATTATGAGAATGCTATTGA 716
||||||||| ||| ||||||||| |||||||| |||| ||| ||||||||||| |||||
Sbjct 908 ATATAAGTTCTGTTGTGGGAGTTTTGGTGTGACCAAGAATGAGTATGAGAATGCCATTGA 967
Query 717 -GCTTCTTGGCTCACTTGAGCTTGATCAAATTGAGTGTGATTTCAGTGAGCTTCGACAAT 775
|| |||||| ||||||||| |||||||||| |||| ||||||| |||||||||||||||
Sbjct 968 GGC-TCTTGGTTCACTTGAGATTGATCAAATCGAGTTTGATTTCGGTGAGCTTCGACAAT 1026
Query 776 TTAAGGTGATCAAACAGGTTATTCGATATTATAGAGATATGAGTGAAGGCCATTTGAAGA 835
||||| |||||| |||||| |||||||||| ||||| ||||||||||| || |||||||
Sbjct 1027 CTAAGGAGATCAATCAGGTTTTTCGATATTACAGAGAAATGAGTGAAGGACACTTGAAGA 1086
Query 836 CAGTGAGAGATCTTTTGCGGTTTATGCTCATTATTAAGTCTCATGCTTCTCCTCAAAAGC 895
| | |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1087 CTTTCAGAGATCTTTTGCGTTTTATGCTCATTATAAAGTCTCATGCTTCTCCTCAAAAGC 1146
Query 896 TTCTTCCTGCGACTCCTCCTCTCTTGACTGATTCTCCTCATCAAAAAAGATCAAATAGGT 955
||||||||| |||||||||||||||||| |||||||||||||| || ||||||| | |
Sbjct 1147 TTCTTCCTGTGACTCCTCCTCTCTTGACAGATTCTCCTCATCAGAAGAGATCAAGCCGAT 1206
Query 956 TGCTTTTGAAGAAAAGCGATGTTGCGGATAATGACAAGTCTCCGAAATATAGGAACTATA 1015
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 TGCTTTTGAAGAAAAGTGATGTTGCGGATAATGACAAGTCTCCGAAATATAGGAACTATA 1266
Query 1016 GCT-CTGTGGCTGCAAATTTGGGTAGTAGATGGCCTGTGAGGAGACTAATATTTGCAGCT 1074
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 G-TACTGTGGCTGCAAATTTGGGTAGTAGATGGCCTGTGAGGAGACTAATATTTGCAGCT 1325
Query 1075 GAAGTGATAGTGGAGTCACTGAAAGAGATGAAAGCATTGAAGCCGAATGGTATGACTCGG 1134
||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 1326 GAAGTGATAGTAGAGTCACTGAAAGAGATGAAAGCGTTGAAGCAGAACGGTATGACTCGA 1385
Query 1135 CAAGATGTTAGGGATTCAGCTAGATTGCATATTGGAGATACTGGTCTGCTGGATTACGTG 1194
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1386 CAAGATGTTAGGGATTCAGCTAGATTGCATATTGGAGATACCGGTCTGCTTGATTACGTG 1445
Query 1195 TTGAAGTCGATGCACAATGTGGTCGTTGGGGATGTTTTGGTTCGACGTTATGTTGATCCC 1254
||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1446 CTGAAGTCAATGAACAATGTGGTTGTTGGGGATGTTTTGGTTCGACGTTATGTTGATCCC 1505
Query 1255 ATTACACGTATTCTGCACTATACAATACAGGAGCTTGATGATGCGGTGAAAGCCATAGAA 1314
|||||||| || |||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1506 ATTACACGGATCCTGCACTATACAATACAGGATCTTGATGATGCGGTGAAAGCCAAAGAA 1565
Query 1315 CCGAAGAAAGAAGAAGCTGTGGTGCTAGAGGAGATTACTCCTTTGAGGATTTTTACTCCA 1374
||||||||| |||||||||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct 1566 CCGAAGAAAAAAGAAGCTGTTGTGCTAGAGGAGATTACTCCGTTGAGGATTCTTACTCCA 1625
Query 1375 TTGAAAGCTGGAGCTGATGTTTATGGAGATTTGTTGTTACTGTACACAAATGTGTTGTTG 1434
|||||| |||||||||| |||||||||||| |||||||||| |||||||||||| |||||
Sbjct 1626 TTGAAACCTGGAGCTGACGTTTATGGAGATCTGTTGTTACTATACACAAATGTGCTGTTG 1685
Query 1435 AACTATCCAGACTCTGAGCTAGTGAGATCTGCAACTCAAGCAATCTTAGACAGC-AAGCA 1493
||||||||||| ||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 1686 AACTATCCAGAATCTGAGCTAGTGAGATCTGCAACTCAAGCAATCTTAGACT-CTAAACA 1744
Query 1494 CTTCGTTAAGGAGTGGCCTTTATGGGACGACAACAATGACAAAGTATTACAATTTGTTTG 1553
|||| | || ||||||||| |||||||| | | |||||||| ||| || |||||| ||||
Sbjct 1745 CTTCATCAAAGAGTGGCCTATATGGGAC-A-A-CAATGACACAGTCTTGCAATTTCTTTG 1801
Query 1554 CCGTATCAATCCAAGTTTGATTGATTTGAGATCAGAACAGATCACAGAGCTACCTCCTGG 1613
||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| ||||| ||
Sbjct 1802 CCGTATCAATCCAAGTTTGGTTGATGTGAGATCCGAACAGACCACAGAGCTGCCTCCAGG 1861
Query 1614 TGACTTAGTTACAGTACCATTACAAGCCACAGTCTTTGATCTAAAGCAAGCCATTGAAGA 1673
|| ||||| ||||| ||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1862 CGAATTAGTCACAGTGCCATTACAAGCTACAGTCTATGATCTAAAGCAAGCCATTGAAGA 1921
Query 1674 CACTTTCAGAGATACTTACTGCATCTTGTCAAATCTTGTGGTGAGTGAGATTGAAGAGGT 1733
|| |||||||||||||||||||||||||||||| |||| |||| ||||||||| |||||
Sbjct 1922 GACCTTCAGAGATACTTACTGCATCTTGTCAAATTTTGTAGTGACTGAGATTGATGAGGT 1981
Query 1734 T-AAGGAAGACATGAGTTTGACCGAGT-CTTGTTCTGCTTTAACAGTGACG-GGTCATGG 1790
| ||| |||| |||||||||| || || ||||||||||||||||||||| | ||||||||
Sbjct 1982 TGAAG-AAGATATGAGTTTGATCG-GTTCTTGTTCTGCTTTAACAGTGA-GAGGTCATGG 2038
Query 1791 GATTGATTTGGAGTCAAAACTCAAGTGTCAAGGTGGATGTGATACATGGATGGTGAAATG 1850
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2039 GATAGATTTGGAATCAAAACTCAAGTGTCAAGGTGGATGTGATACATGGATGGTGAAATG 2098
Query 1851 TATTTGCAGGGCTAGAGACGATGATGGCGAGAGAATGATATCGTGTGATGTTTGTGAAGT 1910
||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||| ||
Sbjct 2099 TATTTGCAGAGCTAGAGATGATGATGGCGAGAGGATGATATCTTGTGATGTTTGTGAGGT 2158
Query 1911 ATGGCAACATACACGATGTTGCGGTATCGATGATTCAGATACTTTACCTCCACTTTTTGT 1970
||||||||||||||||||||| || || ||||||||||||||||| ||||||||||||||
Sbjct 2159 ATGGCAACATACACGATGTTGTGGGATTGATGATTCAGATACTTTGCCTCCACTTTTTGT 2218
Query 1971 TTGTTCGAATTGCTGTGAAGAATTTGCAGAGCAACAGAGGAAAGTGTTGCAGCCAAAGTA 2030
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2219 TTGTTCGAATTGCTGTGAAGAATTTGCAGAGCAACAGAGGAAAGTGCTGCAGCCAAAGTA 2278
Query 2031 TGAGTTTCCAAGTTCTGAGAACATGTTTCTGATTGAATCTGCAGATGATTTCTTTGGAGA 2090
||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 2279 TGAGTTTCCAAGTTCAGAGAATGTGTTTTTGCTTGAATCTGCAGATGATTTCTTTGGAGA 2338
Query 2091 TCAGAGATGTCTTGGTATGATTTTTCCTGAAGAAAATTATCTCTTGTAAAGTCA-TTTTT 2149
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 2339 TCAGAGATGTCTTGGTATGATTTTTCCTGAAGAAAACTATCTTTTGTAAAGTCAGTTTTT 2398
Query 2150 AGATCAA 2156
||||||
Sbjct 2399 GGATCAA 2405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107077762485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5