BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925766 Length=238 Score E Sequences producing significant alignments: (Bits) Value AT1G66173.1 | Symbols: | other RNA | chr1:24642586-24644068 FO... 279 6e-75 > AT1G66173.1 | Symbols: | other RNA | chr1:24642586-24644068 FORWARD LENGTH=1483 Length=1483 Score = 279 bits (151), Expect = 6e-75 Identities = 201/224 (90%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 19 ATATGGATCATCCTCAAG-ATCCTCGAGTTACATCCAAA-TGTTCAAGTATTCCTCTCCT 76 |||||||| |||||| || ||||||||||| || |||| || |||||||||||||| || Sbjct 12 ATATGGATGATCCTC-AGTCTCCTCGAGTTA-ATTCAAATTGCTCAAGTATTCCTCTTCT 69 Query 77 TGGTTGTATCATGGACACTCTAGTTCATCTTTTTACGATCTTTTCTGACGAACAAGGCAA 136 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 70 TGGTTGCATCATGGACACTCTTGTTCATCTTTTTACGATCTTTTCTGACGAACAAGGCAA 129 Query 137 AGAAGCCGTCGACAAGGCGGTTGCGGAAAATCGAGCAAG-TCAGAAACACTTTAGGCAAC 195 | ||| |||||||| ||||||||||||||||| || || ||| |||||||||||||||| Sbjct 130 ACAAGTCGTCGACACTGCGGTTGCGGAAAATCGTGC-AGCTCATAAACACTTTAGGCAAC 188 Query 196 TCAACTGTGTTAAACTCAATTAGCTCC-TGATGATAAGTATTTC 238 ||||||||||||||||||| |||| || ||||||||||| |||| Sbjct 189 TCAACTGTGTTAAACTCAACTAGC-CCATGATGATAAGTTTTTC 231 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10757298286 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5