BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925766
Length=238
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66173.1 | Symbols: | other RNA | chr1:24642586-24644068 FO... 279 6e-75
> AT1G66173.1 | Symbols: | other RNA | chr1:24642586-24644068
FORWARD LENGTH=1483
Length=1483
Score = 279 bits (151), Expect = 6e-75
Identities = 201/224 (90%), Gaps = 8/224 (4%)
Strand=Plus/Plus
Query 19 ATATGGATCATCCTCAAG-ATCCTCGAGTTACATCCAAA-TGTTCAAGTATTCCTCTCCT 76
|||||||| |||||| || ||||||||||| || |||| || |||||||||||||| ||
Sbjct 12 ATATGGATGATCCTC-AGTCTCCTCGAGTTA-ATTCAAATTGCTCAAGTATTCCTCTTCT 69
Query 77 TGGTTGTATCATGGACACTCTAGTTCATCTTTTTACGATCTTTTCTGACGAACAAGGCAA 136
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 70 TGGTTGCATCATGGACACTCTTGTTCATCTTTTTACGATCTTTTCTGACGAACAAGGCAA 129
Query 137 AGAAGCCGTCGACAAGGCGGTTGCGGAAAATCGAGCAAG-TCAGAAACACTTTAGGCAAC 195
| ||| |||||||| ||||||||||||||||| || || ||| ||||||||||||||||
Sbjct 130 ACAAGTCGTCGACACTGCGGTTGCGGAAAATCGTGC-AGCTCATAAACACTTTAGGCAAC 188
Query 196 TCAACTGTGTTAAACTCAATTAGCTCC-TGATGATAAGTATTTC 238
||||||||||||||||||| |||| || ||||||||||| ||||
Sbjct 189 TCAACTGTGTTAAACTCAACTAGC-CCATGATGATAAGTTTTTC 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10757298286
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5