BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925769
Length=428
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48540.1 | Symbols: | receptor-like protein kinase-related ... 333 8e-91
> AT5G48540.1 | Symbols: | receptor-like protein kinase-related
family protein | chr5:19668964-19669920 REVERSE LENGTH=957
Length=957
Score = 333 bits (180), Expect = 8e-91
Identities = 198/207 (96%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 204 AGACTTAAGTGCTTTGGATTGCGCTCAATGCTTTGCAACTACGGTCGGGAGCTTCATAAC 263
||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 621 AGACTTAAGCGAATTGGATTGCGCTCAATGCTTTGCAACTGCGGTCGGGAGCTTCATGAC 680
Query 264 AACTTGCCACAACAAGAAGGGATGTCGTGTTTTGTATAGTAGTTGCTATGTCCGGTACGA 323
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 681 AACTTGCCACAACAAGAAAGGTTGTCGTGTTTTGTATAGTAGTTGCTATGTCCGGTACGA 740
Query 324 GTTTTATCCGTTTTATTTCCCTCTTGATCCGGCTAAAACCGGTCCTAGTGTTGGTAGAAT 383
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GTTTTATCCGTTTTACTTCCCTCTTGATCCGGCTAAAACCGGTCCTAGTGTTGGTAGAAT 800
Query 384 TTCTTCCGTTCGTCTCTCTCCGTAATC 410
||||||||||| |||||||||||||||
Sbjct 801 TTCTTCCGTTCATCTCTCTCCGTAATC 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20308170596
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5