BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925774
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66230.1 | Symbols: MYB20, AtMYB20 | myb domain protein 20 |... 723 0.0
> AT1G66230.1 | Symbols: MYB20, AtMYB20 | myb domain protein 20
| chr1:24677154-24678415 FORWARD LENGTH=1186
Length=1186
Score = 723 bits (391), Expect = 0.0
Identities = 448/476 (94%), Gaps = 2/476 (0%)
Strand=Plus/Plus
Query 2 gagagggagagagagagaAATGGGAAGACAACCATGCTGTGACAAAGTAGGGTTGAAGAA 61
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 150 GAGAGAGAGAGAGAGAGAAATGGGGAGACAACCATGCTGTGACAAAGTAGGGTTGAAGAA 209
Query 62 AGGACCATGGACTGCAGAAGAAGACATGAAGCTCATAAACTTCATCCTTACCAATGGACA 121
||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||
Sbjct 210 AGGACCATGGACTGCAGAAGAGGATAGGAAGCTCATAAACTTCATCCTTACCAATGGACA 269
Query 122 ATGTTGTTGGAGAGCTGTTCCTAAGCTTGCTGGTCTTCTTAGGTGTGGCAAGAGTTGCAG 181
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 270 ATGTTGTTGGAGAGCTGTTCCTAAGCTTTCTGGTCTTCTTAGGTGTGGCAAGAGTTGCAG 329
Query 182 ACTTCGTTGGACCAACTATCTCAGACCAGACCTTAAGAGAGGTCTTCTCTCTGATTATGA 241
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 330 ACTTCGTTGGACTAACTATCTTAGACCAGACCTTAAGAGAGGTCTTCTCTCTGATTACGA 389
Query 242 GGAGAAGATGGTCATTGATCTCCATTCCCAGCTCGGAAATAGGTGGTCAAAGATAGCTTC 301
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 390 AGAGAAGATGGTCATTGATCTCCATTCCCAGCTTGGAAACAGGTGGTCAAAGATAGCTTC 449
Query 302 TCATTTACCAGGAAGAACAGACAACGAAATCAAGAATCATTGGAACACTCATATCAAGAA 361
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 450 TCATTTACCAGGAAGAACAGACAACGAAATCAAGAATCATTGGAACACTCACATCAAGAA 509
Query 362 GAAGTTAAGGAAAATGGGGATTGATCCTCTCACTCATAAACCACTCTCTATCGTCGAACA 421
|||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 510 GAAGTTGAGGAAAATGGGGATTGATCCTCTTACACATAAACCACTCTCTATCGTCGAAAA 569
Query 422 AGAAGATGAAGAACCCGTAAAGAAGTTGCAGAA-AATTCAAATGCCTATACAAGAA 476
|||||| ||||||||| |||||||| | ||||| ||| || | ||| | ||||||
Sbjct 570 AGAAGACGAAGAACCCTTAAAGAAGCTACAGAATAATACAGTT-CCTTTTCAAGAA 624
Score = 501 bits (271), Expect = 5e-141
Identities = 355/393 (90%), Gaps = 16/393 (4%)
Strand=Plus/Plus
Query 530 CAACATCAAGAACATGTCAAGACTTGGAGAGTCTTTAGATGATGATCAATTCATGGCGAT 589
||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 648 CAACATCAAGAACATATCAAGACTTGAAGAGTCTTTAGGTGATGATCAATTCATGGAGAT 707
Query 590 AAATCTTGAGTATGGTGTCGAAGATGTCCCTCTGATTGATCCAGAATCTTTAGAGCTTAT 649
||||||||||||||||||||||||||||||||| ||||| |||| |||||||| |||||
Sbjct 708 AAATCTTGAGTATGGTGTCGAAGATGTCCCTCTTATTGAAACAGAGTCTTTAGACCTTAT 767
Query 650 TTGCAGCAACTCAACAATGTCTTCATCCACGTCCACCTCTTCGAATTCTTCTAATGATTC 709
|||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 768 CTGCAGCAATTCAACAATGTCTTCATCCACGTCCACATCTTCGCATTCTTCTAATGATTC 827
Query 710 GAGTTTCTTGAAGGATTTGCAGTTTACGGATTTCGAGTGGTCC-A--AT--TACG-GTAA 763
|||||||||||||||||||||||| |||| |||||||||||| | || || ||||
Sbjct 828 GAGTTTCTTGAAGGATTTGCAGTTCCCGGAGTTCGAGTGGTCCGACTATGGTAATAGTAA 887
Query 764 CA--G-TAATAAT---GGTGTGGACAACATTATAGAGAACAATATGATGAGCCTGTGGGA 817
| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TAATGATAATAATAATGGTGTGGACAACATTATAGAGAACAATATGATGAGCCTGTGGGA 947
Query 818 TATT-GATGACTTTAGCAGTTTGGATTTGCTGCTAAATGATGAGAGTTCTTCCACTTTTG 876
||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 948 AATTAG-TGACTTTAGCAGTTTGGATTTGCTGCTTAATGATGAGAGTTCTTCCACTTTTG 1006
Query 877 GGTTGTTTTGAATTCATT-TTAAAGTATATGGT 908
|||||||||||||||||| |||| | |||||||
Sbjct 1007 GGTTGTTTTGAATTCATTCTTAA-GAATATGGT 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44356751801
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5