BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925774 Length=908 Score E Sequences producing significant alignments: (Bits) Value AT1G66230.1 | Symbols: MYB20, AtMYB20 | myb domain protein 20 |... 723 0.0 > AT1G66230.1 | Symbols: MYB20, AtMYB20 | myb domain protein 20 | chr1:24677154-24678415 FORWARD LENGTH=1186 Length=1186 Score = 723 bits (391), Expect = 0.0 Identities = 448/476 (94%), Gaps = 2/476 (0%) Strand=Plus/Plus Query 2 gagagggagagagagagaAATGGGAAGACAACCATGCTGTGACAAAGTAGGGTTGAAGAA 61 ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 150 GAGAGAGAGAGAGAGAGAAATGGGGAGACAACCATGCTGTGACAAAGTAGGGTTGAAGAA 209 Query 62 AGGACCATGGACTGCAGAAGAAGACATGAAGCTCATAAACTTCATCCTTACCAATGGACA 121 ||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| Sbjct 210 AGGACCATGGACTGCAGAAGAGGATAGGAAGCTCATAAACTTCATCCTTACCAATGGACA 269 Query 122 ATGTTGTTGGAGAGCTGTTCCTAAGCTTGCTGGTCTTCTTAGGTGTGGCAAGAGTTGCAG 181 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 270 ATGTTGTTGGAGAGCTGTTCCTAAGCTTTCTGGTCTTCTTAGGTGTGGCAAGAGTTGCAG 329 Query 182 ACTTCGTTGGACCAACTATCTCAGACCAGACCTTAAGAGAGGTCTTCTCTCTGATTATGA 241 |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 330 ACTTCGTTGGACTAACTATCTTAGACCAGACCTTAAGAGAGGTCTTCTCTCTGATTACGA 389 Query 242 GGAGAAGATGGTCATTGATCTCCATTCCCAGCTCGGAAATAGGTGGTCAAAGATAGCTTC 301 |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 390 AGAGAAGATGGTCATTGATCTCCATTCCCAGCTTGGAAACAGGTGGTCAAAGATAGCTTC 449 Query 302 TCATTTACCAGGAAGAACAGACAACGAAATCAAGAATCATTGGAACACTCATATCAAGAA 361 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 450 TCATTTACCAGGAAGAACAGACAACGAAATCAAGAATCATTGGAACACTCACATCAAGAA 509 Query 362 GAAGTTAAGGAAAATGGGGATTGATCCTCTCACTCATAAACCACTCTCTATCGTCGAACA 421 |||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| | Sbjct 510 GAAGTTGAGGAAAATGGGGATTGATCCTCTTACACATAAACCACTCTCTATCGTCGAAAA 569 Query 422 AGAAGATGAAGAACCCGTAAAGAAGTTGCAGAA-AATTCAAATGCCTATACAAGAA 476 |||||| ||||||||| |||||||| | ||||| ||| || | ||| | |||||| Sbjct 570 AGAAGACGAAGAACCCTTAAAGAAGCTACAGAATAATACAGTT-CCTTTTCAAGAA 624 Score = 501 bits (271), Expect = 5e-141 Identities = 355/393 (90%), Gaps = 16/393 (4%) Strand=Plus/Plus Query 530 CAACATCAAGAACATGTCAAGACTTGGAGAGTCTTTAGATGATGATCAATTCATGGCGAT 589 ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||| Sbjct 648 CAACATCAAGAACATATCAAGACTTGAAGAGTCTTTAGGTGATGATCAATTCATGGAGAT 707 Query 590 AAATCTTGAGTATGGTGTCGAAGATGTCCCTCTGATTGATCCAGAATCTTTAGAGCTTAT 649 ||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||| Sbjct 708 AAATCTTGAGTATGGTGTCGAAGATGTCCCTCTTATTGAAACAGAGTCTTTAGACCTTAT 767 Query 650 TTGCAGCAACTCAACAATGTCTTCATCCACGTCCACCTCTTCGAATTCTTCTAATGATTC 709 |||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 768 CTGCAGCAATTCAACAATGTCTTCATCCACGTCCACATCTTCGCATTCTTCTAATGATTC 827 Query 710 GAGTTTCTTGAAGGATTTGCAGTTTACGGATTTCGAGTGGTCC-A--AT--TACG-GTAA 763 |||||||||||||||||||||||| |||| |||||||||||| | || || |||| Sbjct 828 GAGTTTCTTGAAGGATTTGCAGTTCCCGGAGTTCGAGTGGTCCGACTATGGTAATAGTAA 887 Query 764 CA--G-TAATAAT---GGTGTGGACAACATTATAGAGAACAATATGATGAGCCTGTGGGA 817 | | ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 888 TAATGATAATAATAATGGTGTGGACAACATTATAGAGAACAATATGATGAGCCTGTGGGA 947 Query 818 TATT-GATGACTTTAGCAGTTTGGATTTGCTGCTAAATGATGAGAGTTCTTCCACTTTTG 876 ||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 948 AATTAG-TGACTTTAGCAGTTTGGATTTGCTGCTTAATGATGAGAGTTCTTCCACTTTTG 1006 Query 877 GGTTGTTTTGAATTCATT-TTAAAGTATATGGT 908 |||||||||||||||||| |||| | ||||||| Sbjct 1007 GGTTGTTTTGAATTCATTCTTAA-GAATATGGT 1038 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44356751801 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5