BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925780
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66250.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 2132 0.0
> AT1G66250.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr1:24692894-24695515 FORWARD LENGTH=1786
Length=1786
Score = 2132 bits (1154), Expect = 0.0
Identities = 1431/1563 (92%), Gaps = 26/1563 (2%)
Strand=Plus/Plus
Query 1 AAAAAAGtctgtctctttccatgg--------ctcc-tcttcttctcctttctctttctc 51
|||||||||| ||||||||||||| |||| |||||||||||||||||||||||
Sbjct 150 AAAAAAGTCTCTCTCTTTCCATGGCTTCTCTTCTCCATCTTCTTCTCCTTTCTCTTTCTC 209
Query 52 ttttagctcttgcttcagcttctccttctcctccAGCTGATGAAGGTTCATATATCGGAG 111
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 210 TTTTAGTTCTTGCTTCAGCTTCTCCTTCTCCTCCAGCTGATGAAGGTTCATATATTGGAG 269
Query 112 TTAATATAGGGACCGATCTTTCGGATATGCCTCATCCAACACAAGTTGTTTCTTTACTAA 171
| || |||||||| |||||||| |||||||| |||||||||||||||||| || ||||||
Sbjct 270 TAAACATAGGGACTGATCTTTCTGATATGCCACATCCAACACAAGTTGTTGCTCTACTAA 329
Query 172 AAGCTCAACAAATTCGACATATTCGTTTATACGATGCTGATCCCGGGATGTTGATTGCTT 231
|||||||| |||| ||||||||||| |||||| | |||||||||||| |||||||||||
Sbjct 330 AAGCTCAAGAAATCCGACATATTCGATTATACAACGCTGATCCCGGGTTGTTGATTGCTC 389
Query 232 TAGCAAACACTGGTATCAAAGTTATAATCTCAATTCCTAATGACCAACTTCTTGGTATTG 291
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 390 TAGCAAACACTGGTATCAAAGTTATAATCTCCATTCCTAATGACCAGCTTCTTGGTATAG 449
Query 292 GTCAATCCAATTCAACCGCTGCGAATTGGGTTAAACGTAATGTCATTGCGCATTACCCTG 351
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 450 GTCAATCCAATTCAACCGCAGCGAATTGGGTTAAACGCAATGTCATTGCACATTACCCTG 509
Query 352 CAACGACT-ATAACCGCGATTTCTGTTGGCTCTGAGGTTTTGACTAGTCTCTCTAATGCA 410
|||||| | ||||||||| ||||||||||||||||||| | || |||||||||||||||
Sbjct 510 CAACGA-TGATAACCGCGGTTTCTGTTGGCTCTGAGGTGCTAACCAGTCTCTCTAATGCA 568
Query 411 GCACCAGTTCTTGTCAGTGCTATAAAGAATGTTCATGCTGCTTTACTTTCGTCGAATCTT 470
||||| ||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct 569 GCACCTGTTCTAGTCAGTGCTATAAAGAACGTTCATGCTGCTTTACTCTCGGCGAATCTT 628
Query 471 GATC-GGTTGATCAAAGTTTCTACTCCTTTATCCACTTCCTTGATTCTTGACCCTTTTCC 529
|| | |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 629 GA-CAAGTTGATAAAAGTTTCTACTCCTTTATCAACTTCCTTGATTCTTGATCCTTTTCC 687
Query 530 TCCGTCACAAGCCTTCTTTAACCGCTCCTTGAATTCGGTTATAGTCCCGTTACTAAGCTT 589
||| || ||||| ||||||||||| || |||||| |||||||||| ||||||||||||||
Sbjct 688 TCCATCGCAAGCGTTCTTTAACCGTTCTTTGAATGCGGTTATAGTTCCGTTACTAAGCTT 747
Query 590 CTTGCAGTCTACAAACTCATACCTGATGATGAATGTGTATCCTTATTA-TGACTATATGC 648
||||||||| |||||||||||||||||| ||||||||||||| || | |||||||||||
Sbjct 748 CTTGCAGTCAACAAACTCATACCTGATGGTGAATGTGTATCCATA-CATTGACTATATGC 806
Query 649 AATCAAACGGCGTGATTCC-TCTAGACTACGCGCTCTTCAAACCGATTCCTCCAAACAAA 707
|||||||||| |||||||| | ||||||||||| | ||||||||||| ||||||||||||
Sbjct 807 AATCAAACGGTGTGATTCCGT-TAGACTACGCGTTGTTCAAACCGATACCTCCAAACAAA 865
Query 708 GAAGCTGTTGATGCCAACACACTTGTTCGTTACTCAAACGCCTTTGATGCAATGGTTGAT 767
|||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 866 GAAGCTGTTGATGCAAACACTCTTGTTCGTTACTCAAACGCTTTTGATGCAATGGTTGAT 925
Query 768 GCAACATATTTCGCAATGGC-TTATTTGAACTTCACGAACATTCCGGTTTTGGTAACCGA 826
||||| || ||||| ||||| || | |||||||| |||||||||||||| ||||||||
Sbjct 926 GCAACGTACTTCGCTATGGCGTT-CCTCAACTTCACAAACATTCCGGTTTTAGTAACCGA 984
Query 827 ATCAGGCTGGCCTTCGAAAGGCGAAACCAACGAGCCTGATGCTACACTCGATAACGCCAA 886
||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||
Sbjct 985 ATCAGGCTGGCCTTCGAAAGGAGAAACCAATGAGCCTGATGCTACACTTGACAACGCCAA 1044
Query 887 CACTTATAACAGCAACCTCATCAGACATGTTCTCAACAAGACGGGAACACCTAAGCGCCC 946
|||||| ||||| || ||||| ||||||||||| |||||||| ||||| || || |||||
Sbjct 1045 CACTTACAACAGTAATCTCATTAGACATGTTCTTAACAAGACCGGAACTCCGAAACGCCC 1104
Query 947 GGGAATCGCTGTAAGTACTTACATTTACGAGCTCTACAACGAAGATACAAAAGCAGGATC 1006
||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1105 GGGGATCGCTGTGAGTACTTATATTTACGAGCTTTACAATGAAGATACAAAAGCAGG--- 1161
Query 1007 TTTATCAGAGAAGAATTGGGGTTTGTTTAATGCAAATGGTGATCCGGTTTACGTACTTCG 1066
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1162 TTTATCAGAGAAGAATTGGGGGTTGTTTAATGCAAATGGTGAACCGGTTTACGTACTTCG 1221
Query 1067 TTTGACTAACTCGGGTTCGGTTCTAGCTAACGATACCACGAACCAAACTTACTGTACTGC 1126
|||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 1222 GTTGACTAACTCGGGCTCGGTTCTAGCTAACGATACAACGAACCAGACTTATTGTACTGC 1281
Query 1127 AAGAGAAGGTGCTGATCCAAAGATGCTTCAAGCTGCTCTTGATTGGGCTTGTGGCCCCGG 1186
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1282 AAGAGAAGGTGCTGATACAAAGATGCTTCAAGCTGCTCTTGATTGGGCTTGTGGTCCTGG 1341
Query 1187 GAAGATCGATTGCTCGCCTATTAAGCAAGGAGAGACTTGTTATGAACCGGATAATGT-GA 1245
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1342 AAAGATTGATTGTTCGCCTATTAAGCAAGGAGAGACTTGTTATGAACCGGATAATGTCG- 1400
Query 1246 TTGCGCATGCTAACTACGCGTTTGATACTTATTATCATCAGACTGGGAATAATCCTGATG 1305
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 TCGCGCATGCTAACTACGCGTTTGATACTTATTATCATCAGACTGGGAATAATCCTGATG 1460
Query 1306 CTTGCAACTTCAATGGAGTTGCTAGTATCACCACCACAGATCCAAGTCATGGTACATGTG 1365
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1461 CTTGCAACTTCAATGGTGTTGCTAGTATCACTACCACAGATCCAAGTCATGGTACATGTG 1520
Query 1366 TGTTTGCTGGAAGTCGCGGTAATGGTAGAAACGGGACGTCTGTGAACATAACAGCGCCAT 1425
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 TGTTTGCTGGGAGCCGCGGTAATGGTAGAAACGGGACGTCTGTGAACATAACAGCGCCAT 1580
Query 1426 CGGCAAACTCAACAACCTCGTCTGGAATACGGAGTGATTTGTATTACAGTCGGGGTATAT 1485
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1581 CGGCAAACTCAACAACTTCTTCTGGAATACGGAGTGATTTGTATTACAGTCGGGGTATAT 1640
Query 1486 GGAGCATTCT-GACAGTAATGATTTTGAATGTTGCTAATCTCTTGTGAAAAATCTTTCGG 1544
|||| || || |||||||||||||||||| ||||||||| |||||||| |||||||| ||
Sbjct 1641 GGAGTAT-CTTGACAGTAATGATTTTGAACGTTGCTAATATCTTGTGAGAAATCTTTGGG 1699
Query 1545 ACA 1547
|||
Sbjct 1700 ACA 1702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76606031670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5