BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925784
Length=635
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66780.1 | Symbols: | MATE efflux family protein | chr1:249... 671 0.0
AT1G64820.1 | Symbols: | MATE efflux family protein | chr1:240... 433 1e-120
AT1G66770.1 | Symbols: SWEET6, AtSWEET6 | Nodulin MtN3 family p... 158 8e-38
> AT1G66780.1 | Symbols: | MATE efflux family protein | chr1:24909213-24911485
FORWARD LENGTH=1458
Length=1458
Score = 671 bits (363), Expect = 0.0
Identities = 411/435 (94%), Gaps = 0/435 (0%)
Strand=Plus/Plus
Query 132 GCCGTTGCTATCGCTACTTCTCTTACCAACGTCACCGGCTTCAGCCTCCTCTTTGGATTG 191
||||||||||| || |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 220 GCCGTTGCTATTGCCACTTCTCTTACCAATGTCACCGGCTTCAGCCTCATCTTTGGATTG 279
Query 192 GCAGGTGCGTTAGAGACACTGTGTGGTCAAGCTTTTGGAGCTGAGCAATTTAGGAAAATC 251
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 280 GCAGGTGCGTTAGAGACACTGTGTGGTCAAGCTTTTGGAGCTGGGCAATTTAGGAATATC 339
Query 252 GGTGCATACACTTATAGCTCAATGCTATGTCTTCTCTTGTTTTGTTTCCCAATCTCACTT 311
||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 340 AGTGCATACACTTACGGCTCAATGCTATGTCTTCTCTTGGTCTGTTTCCCAATCTCACTT 399
Query 312 TTGTGGGTTTTTATGGACAAACTATTGGAGCTTTTCCATCAAGATCCTCTCATCTCTCAT 371
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 400 TTGTGGGTTTTTATGGACAAACTCTTGGAGCTTTTCCATCAAGATCCTCTTATCTCTCAA 459
Query 372 TTAGCTTGTAGATATTCGATCTGGCTTATACCGGCTTTATTCGGATACTCTGTTCTTCAA 431
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 460 TTAGCTTGTAGATACTCAATCTGGCTCATACCGGCTTTATTCGGATACTCTGTTCTTCAA 519
Query 432 TCTATGACTCGGTTTTTCCAGTCACAAGGATTGGTTCTACCTCTCTTCTTGAGCTCTCTC 491
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 TCTATGACTCGATTTTTCCAGTCACAAGGATTGGTTCTACCTCTCTTCTTGAGCTCTCTT 579
Query 492 GGAGCTCTCTGTTTTCACATTCCCTTTTCGTGGCTTCTTGTCTATAAACTGAGATTTGGA 551
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 580 GGAGCTCTCTTTTTTCACGTTCCCTTTTCGTGGCTTCTTGTCTATAAACTGAGATTCGGA 639
Query 552 ATCGTCAGCGCTGCT 566
|||||| |||| |||
Sbjct 640 ATCGTCGGCGCCGCT 654
> AT1G64820.1 | Symbols: | MATE efflux family protein | chr1:24088605-24090558
FORWARD LENGTH=1509
Length=1509
Score = 433 bits (234), Expect = 1e-120
Identities = 364/426 (85%), Gaps = 12/426 (3%)
Strand=Plus/Plus
Query 147 ACTTCTCTTACCAACGTCACCGGCTTCAGCCTCCTCTTTGGATTGGCAGGTGCGTTAGAG 206
||||| || ||||| ||||| || ||||||||| || |||| || ||||||||||||||
Sbjct 217 ACTTCCCTCACCAATGTCACTGGTTTCAGCCTCATCGTTGGGTTTGCAGGTGCGTTAGAC 276
Query 207 ACACTGTGTGGTCAAGCTTTTGGAGCTGAGCAATTTAGG-AAAATCGGTGCATACACTTA 265
|| || || ||||||||||||||||| || |||||| || ||||| ||||||||||||||
Sbjct 277 ACTCTTTGCGGTCAAGCTTTTGGAGCAGAACAATTT-GGAAAAATTGGTGCATACACTTA 335
Query 266 TAGCTCAATGCTATGTCTTCTC-TTGTTTTGTTTCCCAATCTCACTTTTGT-GGGTTTTT 323
||||||||||| ||||||||| || || ||||| |||||| || | || |||||||
Sbjct 336 CAGCTCAATGCTCTGTCTTCTCGTT-TTCTGTTTTTCAATCT--CTATCGTATGGTTTTT 392
Query 324 -ATGGACAAACTATTGGAGCTTTTCCATCAAGATCCTCTCATCTCTCATTTAGCTTGTAG 382
|||||||| || |||||| |||||||||||||||||||||||||||| |||||||| ||
Sbjct 393 CATGGACAAGCTCTTGGAGATTTTCCATCAAGATCCTCTCATCTCTCAATTAGCTTGCAG 452
Query 383 ATATTCGATCTGGCTTATACCGGCTTTATTCGGATACTCTGTTCTTCAATCTATGACTCG 442
||| || |||||||| ||||||||||||||||||| | || |||||||| ||||||||||
Sbjct 453 ATACTCAATCTGGCTCATACCGGCTTTATTCGGATTCACTCTTCTTCAACCTATGACTCG 512
Query 443 GTTTTTCCAGTCACAAGGATTGGTTCTACCTCTCTTCTTGAGCTCTCTCGGAGCTCTCTG 502
|| |||||||||||||||| | ||| ||||||||| |||||||||| |||||||| ||
Sbjct 513 GTATTTCCAGTCACAAGGAATAACTCTTCCTCTCTTCGTGAGCTCTCTTGGAGCTCTTTG 572
Query 503 TTTTCACATTCCCTTTTC-G-TGGCTTCTTGTCTATAAACTGAGATTTGGAATCGTCAGC 560
|||||||||| || |||| | |||||||||||||||||||||| ||||||||| || ||
Sbjct 573 TTTTCACATT-CC-TTTCTGTTGGCTTCTTGTCTATAAACTGAAATTTGGAATAGTTGGC 630
Query 561 GCTGCT 566
|| |||
Sbjct 631 GCCGCT 636
> AT1G66770.1 | Symbols: SWEET6, AtSWEET6 | Nodulin MtN3 family
protein | chr1:24906451-24907236 REVERSE LENGTH=786
Length=786
Score = 158 bits (85), Expect = 8e-38
Identities = 97/103 (94%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1 TTAGGAAATTTCATCTCTCTATGTTTGTTTCTGTCACCAACGCCAACGTTTGTACACATA 60
|||||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct 46 TTAGGAAACTTCATCTCTCTATGTTTGTTTCTATCGCCAACGCCAACGTTTATACACATA 105
Query 61 GTGAAAAAGAAGTCAGTGGAAAAATTCTCACCAATGCCATATT 103
||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 106 GTGAAAAAGAAGTCAGTGGAAAAATACTCACCATTGCCATATT 148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30642829670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5