BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925788
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66345.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2100 0.0
> AT1G66345.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:24737719-24739353 FORWARD LENGTH=1635
Length=1635
Score = 2100 bits (1137), Expect = 0.0
Identities = 1468/1625 (90%), Gaps = 34/1625 (2%)
Strand=Plus/Plus
Query 22 TGCGCCGCTTCGTAGAACAACAACAATGGCGTCACTTCA-TTCCTCCATCAAAACC-ATC 79
|||||||||| ||||||||||||||||||||| |||| | || ||| ||| || || |||
Sbjct 14 TGCGCCGCTTAGTAGAACAACAACAATGGCGTTACTT-AGTTTCTCAATC-AACCCGATC 71
Query 80 TCCAAAACTCATCCATGGCTTCTTCTCCTTCTCCTCCAAAACT-ATCCCAAATCCAAACA 138
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 72 TCCAAAACTCATCCATGGCTTCTTCTCCTTCTCCTCCAAAACTAAT-CCAAATCCAAACA 130
Query 139 AACAACAACAAATCCTCATCGATTCCATCTCCAAATCCCTCCAGTCCAACGATAACTGGG 198
|||||||||||||||||||||| | |||||||||||||||||| |||||||||| |||||
Sbjct 131 AACAACAACAAATCCTCATCGACTACATCTCCAAATCCCTCCAATCCAACGATACCTGGG 190
Query 199 AAACTCTCTCCACCAAATTCTCCTCCATCGATTTATCAGATTCCCTCATCGAAACAATCC 258
|||||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||
Sbjct 191 AAACTCTCTCCACCAAATTCTCCTCCATAGATCTATCAGATTCCTTAATCGAAACAATCC 250
Query 259 TTCTCCGATTCAACTCCCCCGAAACCGCGAAACGAGCTTTAACCTTCTTCCATTGGTCAG 318
||||||||||||| |||||||||||| |||| ||||||| |||||||||||||||||
Sbjct 251 TTCTCCGATTCAAAAACCCCGAAACCGCCAAACAAGCTTTATCCTTCTTCCATTGGTCAT 310
Query 319 CTCACACTCGAAATCTCCGCCATGGAATCAGATCTTACGC-TGTCACGATTCACATCCTT 377
| ||||||||||||||||| || ||||||| ||||||||| | | |||||||| ||||||
Sbjct 311 CCCACACTCGAAATCTCCGTCACGGAATCAAATCTTACGCAT-TGACGATTCATATCCTT 369
Query 378 GTCAAAGCTCGATTACTAATCGACGCTCGAGCTTTAATCGAATCGTCTCTGTTGAA-T-T 435
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || | |
Sbjct 370 GTCAAAGCTCGATTACTAATCGACGCTCGAGCTTTAATTGAATCGTCTCTGTTAAATTCT 429
Query 436 CAT--C--TTCCGATTTAGTCGATTCGTTGTTAGATACTTATGTGAAT-TCGTCTTCTAC 490
| | | ||| ||||||||||||||||||||||||||||||| | || || ||||||||
Sbjct 430 CCTCCCGATTCGGATTTAGTCGATTCGTTGTTAGATACTTATGAG-ATCTCATCTTCTAC 488
Query 491 TCCTTTAGTGTTTGATTTGTTAGTTCAATGTTATGCTAAGATTAGGTATTTGGAATTAGG 550
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 489 TCCTTTAGTGTTTGATTTGTTAGTTCAATGTTACGCTAAGATTAGGTATTTGGAATTAGG 548
Query 551 ATTTGAAGTTTTTAAGAGATTGTGTGATTGTGGATTTAGTCTAAGTGTGATTACTTTGAA 610
||||| || || ||||||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 549 GTTTGATGTGTTCAAGAGATTGTGTGATTGTGGATTTACTCTTAGTGTGATTACTTTAAA 608
Query 611 TACGTTGATTCATTTCGCTGCGAAATCGAATCGGGTTGATCTTGTGTGGAGGATTTACGA 670
||||||||||||| | || |||||||||| | ||||||||||||||||||||||||
Sbjct 609 CACGTTGATTCATTACTCTTCGAAATCGAAGATTGATGATCTTGTGTGGAGGATTTACGA 668
Query 671 GTGTGCTATTGATAAGAGGATTTATCCGAACGAGACGACGATTCGGATAATGATT-AGTG 729
||||| |||||||| ||||||||||||||||||| |||||||||||||||||| | |
Sbjct 669 ATGTGCGATTGATAAAAGGATTTATCCGAACGAGATTACGATTCGGATAATGATTCA-AG 727
Query 730 TGTTGTGTAAAGAAGGGAGATTGAAGGAAGTTGTTGATTTGTTAGATAGGATTTATGGTG 789
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 728 TGTTGTGTAAAGAAGGGAGATTGAAAGAAGTTGTTGATTTGTTAGATAGGATTTGTGGTA 787
Query 790 AGAGATGTTTACCTTCAGTGATTGTTAATACGAGTTTGGTGTTTCGGGTTTTGGAAGAGA 849
||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||
Sbjct 788 AGAGATGTTTACCTTCAGTGATTGTGAATACGAGTTTAGTGTTTAGGGTTTTGGAAGAGA 847
Query 850 AGAGAGTTGAGGAGAGTATGAGTTTGTTGAAGAGGTTGTTGATGAAGAATATGGTTGTTG 909
|||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 848 TGAGAATAGAGGAGAGTATGAGTTTGTTGAAGAGATTGTTGATGAAGAATATGGTTGTTG 907
Query 910 ATACAATTGGTTATTCGATTGTTGTGTATGCGAAAACGAAGGAAGGGGATTTGGAGTGTG 969
|||| |||||||||||||||||||| ||||||||| | |||||||| ||||||| || ||
Sbjct 908 ATACTATTGGTTATTCGATTGTTGTTTATGCGAAAGCTAAGGAAGGTGATTTGGTGTCTG 967
Query 970 CGCGGAATGTGTTTGATGAAATGATTCGTA-GAGGTTTTAGTGCGAATGCGTTTGTTTAT 1028
| ||||| ||||||||||||||| ||| | ||||||||||||||||| |||||||||||
Sbjct 968 CACGGAAGGTGTTTGATGAAATGCTTC-AACGAGGTTTTAGTGCGAATTCGTTTGTTTAT 1026
Query 1029 ACGGCT-TTTGTTAGAGTTTGTTGCG-AAAGAGGTGATGTTGAAGAGGCGGAGCGGTTGA 1086
|||| | ||||||||||||||||| | |||| ||||||||| |||| |||||| |||||
Sbjct 1027 ACGG-TGTTTGTTAGAGTTTGTTGTGAAAAG-GGTGATGTTAAAGAAGCGGAGAGGTTGT 1084
Query 1087 TGAGTGAGATGGAGGATTCTGGAGTGAATCCGTATGAAGAAACTTTTAATTTTCTTATTG 1146
|||||||||||||||| |||||||| | ||||||||| || || ||||||| |||||| |
Sbjct 1085 TGAGTGAGATGGAGGAGTCTGGAGTCAGTCCGTATGACGAGACGTTTAATTGTCTTATCG 1144
Query 1147 AG-GGTTGT-GCGAGATT-TGGTAGAGAAGAAAAAGGTTTGGAGTATTGCGAGATTATGG 1203
| |||| | ||||| || ||| | ||||| ||||||||||||||||| ||| | ||||
Sbjct 1145 -GTGGTT-TCGCGAGGTTCGGGT-GGGAAGAGAAAGGTTTGGAGTATTGTGAGGTAATGG 1201
Query 1204 TTGCAAGAGGGCTTATGCCTAGTTGTTCGGCTTTCAATGAGATGGTTAAGAGAT-TAAGT 1262
| | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1202 TAACGAGAGGGCTTATGCCTAGTTGTTCGGCTTTCAATGAGATGGTTAAGAG-TGTAAGT 1260
Query 1263 GAGATTGAGAACGTGAATCGCGCTAATGAAATCCTAACCAAGTCGATAGATAAAGGGTTT 1322
|||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct 1261 AAGATTGAGAACGTGAATCGCGCAAATGAAATCTTAACAAAGTCGATAGATAAAGGGTTT 1320
Query 1323 GTGCCCGATGAACATACGTACTCTCATCTGATTCGAGGATTTGTAGAAGGAAAC-AGTAT 1381
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | |||
Sbjct 1321 GTGCCCGATGAACATACGTACTCTCATCTGATTCGAGGGTTTATAGAAGGAAACGA-TAT 1379
Query 1382 CGATCAAGCGCTTAAGCTGTTCTACGAGATGGAATACCGAAAGATCTCTCCTGGTTTCGA 1441
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1380 CGATCAAGCGCTTAAGCTGTTCTACGAGATGGAATACCGAAAGATGTCTCCTGGTTTCGA 1439
Query 1442 GGTGTTCAGGTCACTAATCGTGGGACTTTGCGCTTGCGGTAAAGTTGAAGCCGGAGAAAA 1501
|||||| ||||||||||| |||||||| ||| |||| |||||||| ||||||||||||||
Sbjct 1440 GGTGTTTAGGTCACTAATTGTGGGACTCTGCACTTGTGGTAAAGTGGAAGCCGGAGAAAA 1499
Query 1502 GTACTTGAGAATTATGAAGAGGAGATTGATAGAGCCTAATGCAGATATATATGAAGCAAT 1561
|||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||| |
Sbjct 1500 GTACTTGAAAATTATGAAGAAGAGGTTGATAGAGCCTAATGCAGATATATATGACGCATT 1559
Query 1562 GATCAATGCATTTCAGAAAATTGGCGATAAAACGAATGCTGATAAAGTTTATAATGAGAT 1621
||| || ||||||||||||||||| |||||||| |||||||||| |||||||||||||||
Sbjct 1560 GATTAAGGCATTTCAGAAAATTGGTGATAAAACAAATGCTGATAGAGTTTATAATGAGAT 1619
Query 1622 GATTT 1626
|||||
Sbjct 1620 GATTT 1624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82027690530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5