BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925795
Length=467
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66390.1 | Symbols: ATMYB90, PAP2, MYB90 | myb domain protei... 405 2e-112
AT1G66370.1 | Symbols: MYB113, AtMYB113 | myb domain protein 11... 361 4e-99
AT1G56650.1 | Symbols: PAP1, MYB75, SIAA1, ATMYB75 | production... 340 5e-93
> AT1G66390.1 | Symbols: ATMYB90, PAP2, MYB90 | myb domain protein
90 | chr1:24763957-24765541 FORWARD LENGTH=986
Length=986
Score = 405 bits (219), Expect = 2e-112
Identities = 301/340 (89%), Gaps = 8/340 (2%)
Strand=Plus/Plus
Query 6 ATTTATCTTTGGGACATGGAGAGTTCCT-CAAATGGGTTGAGAAAAGGTACATGGACTGC 64
|||| ||||||| ||||||| |||| | |||| |||||||| |||||| ||||||||||
Sbjct 81 ATTTTTCTTTGGTCCATGGAGGGTTCGTCCAAA-GGGTTGAGGAAAGGTGCATGGACTGC 139
Query 65 TGAAGAAGATATTCTCTTGAGGAAATGTATTGATAAGTATGGAGAAGGCAAATGGCACCA 124
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 140 TGAAGAAGATAGTCTCTTGAGGCTATGTATTGATAAGTATGGAGAAGGCAAATGGCATCA 199
Query 125 GGTTCCTTTAAGAGCTGGGTTAAACCGATGCGGGAAGGGTTGTAGACTAAGATGGTTGAA 184
|||||||| ||||||||| |||| |||||| | ||| ||||||||||||||||||||||
Sbjct 200 AGTTCCTTTGAGAGCTGGGCTAAATCGATGCAGAAAGAGTTGTAGACTAAGATGGTTGAA 259
Query 185 CTACTTGCAGCCAAGTATCAAAAGAGGAA-ACTTTAGCTCA-GACGAAGTTGATCTTCTC 242
||| ||| ||||||||||||| ||||||| |||| ||| | || ||||||||||||||
Sbjct 260 CTATTTGAAGCCAAGTATCAAGAGAGGAAGACTT-AGCA-ATGATGAAGTTGATCTTCTT 317
Query 243 CTTCGCCTTCGTAAGCTTCTAGGAAACAGGTGGTCACT-GATTGCCGGTAGATTGCCTGG 301
|||||||||| ||||||||||||||| |||||||| || |||||| ||| ||||||||||
Sbjct 318 CTTCGCCTTCATAAGCTTCTAGGAAATAGGTGGTC-CTTGATTGCTGGTCGATTGCCTGG 376
Query 302 TCGGACTGCTAATGATATCAAGAATTACTGGAACACCCAT 341
|||||| ||||||||| |||| ||||||||||||||||||
Sbjct 377 TCGGACCGCTAATGATGTCAAAAATTACTGGAACACCCAT 416
> AT1G66370.1 | Symbols: MYB113, AtMYB113 | myb domain protein
113 | chr1:24753634-24754604 FORWARD LENGTH=741
Length=741
Score = 361 bits (195), Expect = 4e-99
Identities = 276/314 (88%), Gaps = 9/314 (3%)
Strand=Plus/Plus
Query 34 CAAATGGGTTGAGAAAAGGTACATGGACTGCTGAAGAAGATATTCTCTTGAGGAAATGTA 93
|||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 15 CAAA-GGGTTGAGAAAAGGTACATGGACTACTGAAGAAGATATTCTCTTGAGGCAATGCA 73
Query 94 TTGATAAGTATGGAGAAGGCAAATGGCA-CCAGGTTCCTTTAAGAGCTGGGT-TAAACCG 151
|||||||||||||||||||||||||||| | | |||||||||||| || ||| | || ||
Sbjct 74 TTGATAAGTATGGAGAAGGCAAATGGCATCGA-GTTCCTTTAAGAACT-GGTCTCAATCG 131
Query 152 ATGCGGGAAGGGTTGTAGACTAAGATGGTTGAACTACTTGCAGCCAAGTATCAAAAGAGG 211
||| | ||| |||||||||| ||||||||||| || ||| |||||||||| || |||||
Sbjct 132 GTGCCGAAAGAGTTGTAGACTTAGATGGTTGAATTATTTGAAGCCAAGTATTAAGAGAGG 191
Query 212 -AAACTTTAGCTCAGACGAAGTTGATCTTCTCCTTCGCCTTCGTAAGCTTCTAGGAAACA 270
||||| | |||| || |||||||||||| | |||||||||| ||| ||||||||||| |
Sbjct 192 AAAACTCT-GCTCCGATGAAGTTGATCTTGTTCTTCGCCTTCATAAACTTCTAGGAAATA 250
Query 271 GGTGGTCAC-TGATTGCCGGTAGATTGCCTGGTCGGACTGCTAATGATATCAAGAATTAC 329
||||||| | |||| || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 251 GGTGGTC-CTTGATCGCTGGTAGATTGCCTGGTCGGACTGCTAATGATGTCAAGAATTAC 309
Query 330 TGGAACACCCATTT 343
|||||||| |||||
Sbjct 310 TGGAACACTCATTT 323
> AT1G56650.1 | Symbols: PAP1, MYB75, SIAA1, ATMYB75 | production
of anthocyanin pigment 1 | chr1:21233595-21235137 REVERSE
LENGTH=914
Length=914
Score = 340 bits (184), Expect = 5e-93
Identities = 289/340 (85%), Gaps = 6/340 (2%)
Strand=Plus/Plus
Query 5 TATTTATCTTTGGGACATGGAGAGTTCCT-CAAATGGGTTGAGAAAAGGTACATGGACTG 63
||| |||||||| ||||||| |||| | |||| ||| || |||||||| | ||||||
Sbjct 33 TATCTATCTTTGTTCCATGGAGGGTTCGTCCAAA-GGGCTGCGAAAAGGTGCTTGGACTA 91
Query 64 CTGAAGAAGATATTCTCTTGAGGA-AATGTATTGATAAGTATGGAGAAGGCAAATGGCAC 122
|||||||||||| |||||||| || | || ||| ||||||||||||||||||||||||||
Sbjct 92 CTGAAGAAGATAGTCTCTTGA-GACAGTGCATTAATAAGTATGGAGAAGGCAAATGGCAC 150
Query 123 CAGGTTCCTTTAAGAGCTGGGTTAAACCGATGCGGGAAGGGTTGTAGACTAAGATGGTTG 182
|| |||||| ||||||||||| ||||||| ||| |||| |||||||| |||||||||||
Sbjct 151 CAAGTTCCTGTAAGAGCTGGGCTAAACCGGTGCAGGAAAAGTTGTAGATTAAGATGGTTG 210
Query 183 AACTACTTGCAGCCAAGTATCAAAAGAGGAAA-CTTTAGCTCAGACGAAGTTGATCTTCT 241
||||| ||| ||||||||||||| |||||||| ||| ||||| || ||||| ||||||||
Sbjct 211 AACTATTTGAAGCCAAGTATCAAGAGAGGAAAACTT-AGCTCTGATGAAGTCGATCTTCT 269
Query 242 CCTTCGCCTTCGTAAGCTTCTAGGAAACAGGTGGTCACTGATTGCCGGTAGATTGCCTGG 301
|||||||||| || ||||||||| || |||||||| | ||||| || ||||| |||||
Sbjct 270 TCTTCGCCTTCATAGGCTTCTAGGGAATAGGTGGTCTTTAATTGCTGGAAGATTACCTGG 329
Query 302 TCGGACTGCTAATGATATCAAGAATTACTGGAACACCCAT 341
|||||| || ||||| ||||||||||||||||||| |||
Sbjct 330 TCGGACCGCAAATGACGTCAAGAATTACTGGAACACTCAT 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22203492974
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5