BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925796
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66390.1 | Symbols: ATMYB90, PAP2, MYB90 | myb domain protei... 833 0.0
AT1G56650.1 | Symbols: PAP1, MYB75, SIAA1, ATMYB75 | production... 641 0.0
AT1G66370.1 | Symbols: MYB113, AtMYB113 | myb domain protein 11... 542 2e-153
AT1G66380.1 | Symbols: MYB114, AtMYB114 | myb domain protein 11... 503 1e-141
AT1G56640.1 | Symbols: | pseudogene, similar to An2 truncated ... 161 8e-39
> AT1G66390.1 | Symbols: ATMYB90, PAP2, MYB90 | myb domain protein
90 | chr1:24763957-24765541 FORWARD LENGTH=986
Length=986
Score = 833 bits (451), Expect = 0.0
Identities = 679/787 (86%), Gaps = 23/787 (3%)
Strand=Plus/Plus
Query 15 TTTGTTCCATGGAGGCTACTTCCAATGGGTTGACGAAAGGTGCATGGACTGCTGAAGAAG 74
|||| |||||||||| | | ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 88 TTTGGTCCATGGAGGGTTCGTCCAAAGGGTTGAGGAAAGGTGCATGGACTGCTGAAGAAG 147
Query 75 ATAGTCTCTTGAGGAAATGTATTGATAAGTATGGAGAAGGCAAATGGCACCAAGTTCCTT 134
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 148 ATAGTCTCTTGAGGCTATGTATTGATAAGTATGGAGAAGGCAAATGGCATCAAGTTCCTT 207
Query 135 TAAGAGCTGGGCTAAATCGATGCAGGAAGAGTTGTAGACTAAGATGGTTAAACTATTTGA 194
| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 208 TGAGAGCTGGGCTAAATCGATGCAGAAAGAGTTGTAGACTAAGATGGTTGAACTATTTGA 267
Query 195 AGCCAAGTATCAATAGAGGAAAATTTAGCACTGATGAAGTTGATCTTCTTCTTCGCCTCC 254
||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||||| |
Sbjct 268 AGCCAAGTATCAAGAGAGGAAGACTTAGCAATGATGAAGTTGATCTTCTTCTTCGCCTTC 327
Query 255 ATAAGCTTCTAGGAAATAGATGGTCCTTGATTGCTGGTCGATTGCCTGATCGTACCGCAA 314
||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |
Sbjct 328 ATAAGCTTCTAGGAAATAGGTGGTCCTTGATTGCTGGTCGATTGCCTGGTCGGACCGCTA 387
Query 315 ATGATGTTAAGAATTACTGGAACACCCATTTGAGTAGGAGGCATGAA-CTTT-T-TTGTA 371
||||||| || |||||||||||||||||| |||||| | ||||| ||| | |||||
Sbjct 388 ATGATGTCAAAAATTACTGGAACACCCATCTGAGTAAAAAACATGAGTCTTCGTGTTGTA 447
Query 372 -GTTCCAAAATGAAAACGAAAAACATTACTTCCCCTCCTACAACACCTGTCCAAAAAATC 430
|| | |||||||||| ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 448 AGT-CTAAAATGAAAAAGAAAAACATTATTTCCCCTCCTACAACACCGGTCCAAAAAATC 506
Query 431 GAAGTTTTAAAGCCTCGACCTCGATCCTTCTCCGTTAAAAACGCATGTAGCCATCTCAAT 490
| ||||| ||||||||||||||||||||||| ||||| || | || ||||||||||||
Sbjct 507 GGTGTTTTTAAGCCTCGACCTCGATCCTTCTCTGTTAACAATGGTTGCAGCCATCTCAAT 566
Query 491 GG-CTTTCCAAAAGTTGATGTTA-TTCCTCCATGCTCT-GGACTCAATAACAATTATGTT 547
|| || ||| |||||||| ||| ||||| ||||| || |||||||| || ||| |||||
Sbjct 567 GGTCTG-CCAGAAGTTGAT-TTAATTCCTTCATGC-CTTGGACTCAAGAAAAATAATGTT 623
Query 548 TGTGAAAGTAGTATCATATGTGGCGAAGATGA-GAAGAATTATGAGTCTGTGTATAAAAA 606
||||||| |||||||| |||| | ||||||| || ||| |||| | |||| ||||
Sbjct 624 TGTGAAAATAGTATCACATGTAACAAAGATGATGA-GAAAGATGATTTTGTGAATAA--- 679
Query 607 TCTAATGGATAAAGACAATATGTGGTTGAAGAGTTTACTAGAG-AG--CCAAGAGGCAGA 663
||||||| || ||| |||||||||||| ||| |||||| | | | |||||| || ||
Sbjct 680 TCTAATGAATGGAGATAATATGTGGTTGGAGAATTTACTGGGGGAAAACCAAGAAGCTGA 739
Query 664 TGC-ACTGGGTCCAGAAGCAACGACAACAGAAAACGGGGCCACTTTGGAATTTGATGTTG 722
||| | || ||| ||||| |||||| | ||| | ||||||||||||| ||||| ||||
Sbjct 740 TGCGATTGT-TCCTGAAGCGACGACAGCTGAACATGGGGCCACTTTGGCGTTTGACGTTG 798
Query 723 AACAACTTTGGAA-CTTGTTTGATGGAGAGACTGTTGAACTTGATTAGTGTTTCTGACTG 781
| |||||||||| || |||||||||||||||||||||||||||||||||||||| || |
Sbjct 799 AGCAACTTTGGAGTCT-GTTTGATGGAGAGACTGTTGAACTTGATTAGTGTTTCTCACCG 857
Query 782 TTTGTTT 788
|||||||
Sbjct 858 TTTGTTT 864
> AT1G56650.1 | Symbols: PAP1, MYB75, SIAA1, ATMYB75 | production
of anthocyanin pigment 1 | chr1:21233595-21235137 REVERSE
LENGTH=914
Length=914
Score = 641 bits (347), Expect = 0.0
Identities = 658/803 (82%), Gaps = 41/803 (5%)
Strand=Plus/Plus
Query 7 TATCTATATTTGTTCCATGGAGGCTACTTCCAATGGGTTGACG-AAAGGTGCATGGACTG 65
||||||| ||||||||||||||| | | ||||| ||| || || |||||||| ||||||
Sbjct 33 TATCTATCTTTGTTCCATGGAGGGTTCGTCCAAAGGGCTG-CGAAAAGGTGCTTGGACTA 91
Query 66 CTGAAGAAGATAGTCTCTTGAGGA-AATGTATTGATAAGTATGGAGAAGGCAAATGGCAC 124
||||||||||||||||||||| || | || ||| ||||||||||||||||||||||||||
Sbjct 92 CTGAAGAAGATAGTCTCTTGA-GACAGTGCATTAATAAGTATGGAGAAGGCAAATGGCAC 150
Query 125 CAAGTTCCTTTAAGAGCTGGGCTAAATCGATGCAGGAAGAGTTGTAGACTAAGATGGTTA 184
||||||||| |||||||||||||||| || |||||||| ||||||||| ||||||||||
Sbjct 151 CAAGTTCCTGTAAGAGCTGGGCTAAACCGGTGCAGGAAAAGTTGTAGATTAAGATGGTTG 210
Query 185 AACTATTTGAAGCCAAGTATCAATAGAGGAAAATTTAGCACTGATGAAGTTGATCTTCTT 244
||||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||||||
Sbjct 211 AACTATTTGAAGCCAAGTATCAAGAGAGGAAAACTTAGCTCTGATGAAGTCGATCTTCTT 270
Query 245 CTTCGCCTCCATAAGCTTCTAGGAAATAGATGGTCCTTGATTGCTGGTCGATTGCCTGAT 304
|||||||| |||| ||||||||| ||||| ||||| || |||||||| |||| |||| |
Sbjct 271 CTTCGCCTTCATAGGCTTCTAGGGAATAGGTGGTCTTTAATTGCTGGAAGATTACCTGGT 330
Query 305 CGTACCGCAAATGATGTTAAGAATTACTGGAACACCCATTTGAGTAGGAGGCATGAACTT 364
|| ||||||||||| || ||||||||||||||||| ||| |||||| || |||||||
Sbjct 331 CGGACCGCAAATGACGTCAAGAATTACTGGAACACTCATCTGAGTAAGAAACATGAACCG 390
Query 365 TTTTGTA-GTTCCAAA-ATGAAAACGAAAAACATTACTTCCCCT-CCTACAACACCTGTC 421
| ||||| | | ||| ||||||| || | ||||||| ||| | ||||||||||| | |
Sbjct 391 TGTTGTAAGAT--AAAGATGAAAAAGAGAGACATTACG-CCCATTCCTACAACACCGG-C 446
Query 422 -C-AAAAAATCGAA-GTTT-TAAAGCCTCGACCTCGATCCTTCTCCGTTAAAAACG-CAT 476
| |||||| | || |||| ||| ||||||||||||||||||| | ||||| |||| | |
Sbjct 447 ACTAAAAAA-C-AATGTTTATAA-GCCTCGACCTCGATCCTTCACAGTTAACAACGAC-T 502
Query 477 GTAGCCATCTCAATGGCTTTCCAAAAGTTGATGTTATTCCTCCATGCTCT-GGACTCAAT 535
| | ||||||||||| | ||||||||||| |||| |||||||||| || ||||| ||
Sbjct 503 GCAACCATCTCAATGCCCCACCAAAAGTTGACGTTAATCCTCCATGC-CTTGGACTTAAC 561
Query 536 AACAATTATGTTTGTGA-AAGTAGTATCATATGTGGCGAAGATGAGAAGAATTATGAGTC 594
| |||| |||||||||| || ||||||||||| | ||||| ||||||| | | |
Sbjct 562 ATCAATAATGTTTGTGACAA-TAGTATCATATACAACAAAGATAAGAAGAAAGACCAA-C 619
Query 595 T-GTGTATAAAAATCTAATGGATAAAGACAATATGTGGTT-GAAGAGTTTACTAGAG-A- 650
| ||| |||| | | || ||| ||| ||||||||||| || || || |||||| |
Sbjct 620 TAGTGAATAAT--T-TGATTGATGGAGATAATATGTGGTTAGA-GAAATTCCTAGAGGAA 675
Query 651 -GCCAAGAGGCAGATGCACTGGGTCCAGAAGCAACGACAACAGAAAACGGGGCCACTTTG 709
||||||||| |||| ||| ||| ||||| |||||||||||||| |||| ||| |||
Sbjct 676 AGCCAAGAGGTAGATATTTTGGTTCCTGAAGCGACGACAACAGAAAAGGGGGACACCTTG 735
Query 710 GAATTTGATGTTGAACAACTTTGGAA-CTTGTTTGATGGAGAGACTGTTGAACTT-GATT 767
| ||||| ||||| |||||||||| ||| || |||||||||||||| ||| || ||||
Sbjct 736 GCTTTTGACGTTGATCAACTTTGGAGTCTT-TTCGATGGAGAGACTGT-GAAATTTGATT 793
Query 768 AGTGTTTCTGA-CTGTTTGTTTG 789
|||||||| || | ||||||||
Sbjct 794 AGTGTTTC-GAACA-TTTGTTTG 814
> AT1G66370.1 | Symbols: MYB113, AtMYB113 | myb domain protein
113 | chr1:24753634-24754604 FORWARD LENGTH=741
Length=741
Score = 542 bits (293), Expect = 2e-153
Identities = 609/755 (81%), Gaps = 48/755 (6%)
Strand=Plus/Plus
Query 36 CCAATGGGTTGACG-AAAGGTGCATGGACTGCTGAAGAAGATAGTCTCTTGAGGAAATGT 94
|||| ||||||| | |||||| |||||||| |||||||||||| |||||||||| ||||
Sbjct 14 CCAAAGGGTTGA-GAAAAGGTACATGGACTACTGAAGAAGATATTCTCTTGAGGCAATGC 72
Query 95 ATTGATAAGTATGGAGAAGGCAAATGGCACCAAGTTCCTTTAAGAGCTGGGCTAAATCGA 154
||||||||||||||||||||||||||||| | ||||||||||||| |||| || |||||
Sbjct 73 ATTGATAAGTATGGAGAAGGCAAATGGCATCGAGTTCCTTTAAGAACTGGTCTCAATCGG 132
Query 155 TGCAGGAAGAGTTGTAGACTAAGATGGTTAAACTATTTGAAGCCAAGTATCAATAGAGGA 214
||| | |||||||||||||| |||||||| || ||||||||||||||||| || ||||||
Sbjct 133 TGCCGAAAGAGTTGTAGACTTAGATGGTTGAATTATTTGAAGCCAAGTATTAAGAGAGGA 192
Query 215 AAATT-TAGCACTGATGAAGTTGATCTTCTTCTTCGCCTCCATAAGCTTCTAGGAAATAG 273
||| | | || | ||||||||||||||| |||||||||| ||||| ||||||||||||||
Sbjct 193 AAACTCT-GCTCCGATGAAGTTGATCTTGTTCTTCGCCTTCATAAACTTCTAGGAAATAG 251
Query 274 ATGGTCCTTGATTGCTGGTCGATTGCCTGATCGTACCGCAAATGATGTTAAGAATTACTG 333
||||||||||| |||||| ||||||||| ||| || || |||||||| |||||||||||
Sbjct 252 GTGGTCCTTGATCGCTGGTAGATTGCCTGGTCGGACTGCTAATGATGTCAAGAATTACTG 311
Query 334 GAACACCCATTTGAGTAGGAGGCA---TGAACTTTTTTGTA-GTTCCAAAATGA-AAACG 388
|||||| |||||||||| || ||| ||||| | |||| | | || |||| ||||
Sbjct 312 GAACACTCATTTGAGTAAGAAGCACGATGAACGATGCTGTAAGA-CGAAGATGATAAAC- 369
Query 389 AAAAACATTACTTCCCCTCCTACAACACCTGTCCAAAAAATCGAAGTTTTAAAGCCTCGA 448
|||||||||||||| | |||||| || | | |||||||||||| ||||||||||||||
Sbjct 370 AAAAACATTACTTCTCATCCTACTTCATCGGCCCAAAAAATCGATGTTTTAAAGCCTCGG 429
Query 449 CCTCGATCCTTCTCCGTTAAAAAC-GCATGTAGCCATCTCAATGGCTTTCCAAAAGTTGA 507
|||||||||||||||| |||||| | || | | || ||||| ||| |||||||||||
Sbjct 430 CCTCGATCCTTCTCCGATAAAAATAGT-TGCAACGATGTCAATATCTTGCCAAAAGTTGA 488
Query 508 TGTTATTCCTC--CATGCTCTGGACTCAATAACAATTATGTTTGTGAAAGTAGTATCATA 565
||| ||||| ||| || ||||||||| |||||||||||||||||||||||||| | |
Sbjct 489 CGTTGTTCCTTTACAT-CT-TGGACTCAACAACAATTATGTTTGTGAAAGTAGTATTACA 546
Query 566 TGTGGCGAAGATGAG-AAGAATTATGAGTCTGTGTATAA-A--AATCTAATGGATAAAGA 621
||| | |||||||| || || || || || | | ||| | |||||| ||||| |||
Sbjct 547 TGTAACAAAGATGAGCAAAAAG-ATAAG-CT-TAT-TAATATTAATCTATTGGATGGAGA 602
Query 622 CAATATGTGGTTG-AAGAGTTTACTAGAGAGCCAAGAGGCAGATGCACTGGGTCCAGAAG 680
|||||||||| | || |||||||| ||| || | || | | | ||||||||||||
Sbjct 603 TAATATGTGGTGGGAA-AGTTTACTGGAG-GC-A-GATGT-G-T----TGGGTCCAGAAG 652
Query 681 CAACG-ACAACAGAAAACGGG-GCCACTTTGGAATTTGA-TGTTGAACAACTTTGGAACT 737
| ||| | ||||| ||| ||| | || || |||| | |||| ||| ||||| ||
Sbjct 653 CTACGGA-AACAGCAAA-GGGTGTGACCTTACCGCTTGACT-TTGAGCAAATTTGGG-CT 708
Query 738 TG-TTTGATGGAGAGACTGTT-GAACTTGA-TTAG 769
| ||||||| ||||||| || ||||| || ||||
Sbjct 709 CGGTTTGATGAAGAGACT-TTAGAACT-GAATTAG 741
> AT1G66380.1 | Symbols: MYB114, AtMYB114 | myb domain protein
114 | chr1:24757413-24758490 FORWARD LENGTH=420
Length=420
Score = 503 bits (272), Expect = 1e-141
Identities = 371/419 (89%), Gaps = 5/419 (1%)
Strand=Plus/Plus
Query 23 ATGGAGGCTACTTCCAATGGGTTGACGAAAGGTGCATGGACTGCTGAAGAAGATAGTCTC 82
||||||| | | ||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGGTTCGTCCAAAGGGTTGAGGAAAGGTGCATGGACTGCTGAAGAAGATAGTCTC 60
Query 83 TTGAGGAAATGTATTGATAAGTATGGAGAAGGCAAATGGCACCAAGTTCCTTTAAGAGCT 142
|||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 TTGAGGCAGTGTATTGGTAAGTATGGAGAAGGCAAATGGCATCAAGTTCCTTTAAGAGCT 120
Query 143 GGGCTAAATCGATGCAGGAAGAGTTGTAGACTAAGATGGTTAAACTATTTGAAGCCAAGT 202
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGGCTAAATCGGTGCAGGAAAAGTTGTAGACTAAGATGGTTAAACTATTTGAAGCCAAGT 180
Query 203 ATCAATAGAGGAAAATTTAGCACTGATGAAGTTGATCTTCTTCTTCGCCTCCATAAGCTT 262
||||| |||||||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct 181 ATCAAGAGAGGAAAATTTAGTTCTGATGAAGTTGATCTTCTTCTTCGTCTTCATAAGCTT 240
Query 263 CTAGGAAATAGATGGTCCTTGATTGCTGGTCGATTGCCTGATCGTACCGCAAATGATGTT 322
||||||||||| ||||||||||||||||||||||| |||| ||| ||||| ||||||||
Sbjct 241 CTAGGAAATAGGTGGTCCTTGATTGCTGGTCGATTACCTGGTCGGACCGCTAATGATGTC 300
Query 323 AAGAATTACTGGAACACCCATTTGAGTAGGAGGCATGAACTTTTTTGTAGTTCCAAAATG 382
||||| ||||||||||||||| |||||| || |||||||| | ||||| | || ||
Sbjct 301 AAGAACTACTGGAACACCCATCTGAGTAAGAAGCATGAACCGTGTTGTAAAACTAAGATA 360
Query 383 AAAACGAAAAACATTACTT-CCCCTCCTACA-ACACCTGTCCAAAAAATCGA-AGTTTT 438
|||| || ||| |||| | ||||||||| | ||||| | ||||||| |||| | ||||
Sbjct 361 AAAAGGATAAATATTA-TAACCCCTCCTA-ATACACCGGCCCAAAAAGTCGATATTTTT 417
> AT1G56640.1 | Symbols: | pseudogene, similar to An2 truncated
protein, blastp match of 70% identity and 7.4e-11 P-value
to GP|7673092|gb|AAF66731.1|AF146706_1|AF146706 An2 truncated
protein {Petunia x hybrida} | chr1:21229999-21230469 REVERSE
LENGTH=471
Length=471
Score = 161 bits (87), Expect = 8e-39
Identities = 109/119 (92%), Gaps = 3/119 (3%)
Strand=Plus/Plus
Query 157 CAGGAAGAGTTGTAGACTAAGATGGTTAAACTATTTGAAGCCAAGTATCAATAGAGGAAA 216
|||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||
Sbjct 13 CAGGAAGAGTTGTAGACTAAGATGCTTATACTATTTGAAGCCAAGTATCAAGAGAGGAAG 72
Query 217 ATTTA-GCACTGATGAAGTTGATCTTCTTCTTCGCCT-CCATAAGCTTCTAGGAAATAG 273
||||| || |||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 73 ATTTAGGCTCTGATGAAGTTGATCTTCTTCTTCGCCTTCCC-AACCTTCTAGGAAATAG 130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5