BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925805
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59930.1 | Symbols: | MADS-box family protein | chr1:220610... 484 3e-136
AT1G59920.1 | Symbols: | MADS-box family protein | chr1:220594... 468 3e-131
AT5G35120.1 | Symbols: | MADS-box family protein | chr5:133868... 372 3e-102
> AT1G59930.1 | Symbols: | MADS-box family protein | chr1:22061083-22061481
REVERSE LENGTH=399
Length=399
Score = 484 bits (262), Expect = 3e-136
Identities = 358/404 (89%), Gaps = 7/404 (2%)
Strand=Plus/Plus
Query 234 ATGGATCAAGAGGCTTTTTTGCGTCAGAGGATTGAAAGTGAACAAGCGCAATTGCAAAAA 293
|||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 1 ATGGATCAAGAGGCTTTTTTGCGTGAGAGGATTGAAAAAGCACAAGCGCAATTGCAAAAG 60
Query 294 TTGCGTGATGAGAACCGAGATTTGAAGGCTCGGGAAATTATGTGGGGTTGTCTCGGAGGA 353
|||||||||| || |||| ||||| |||||| ||||||||||||||||| ||| ||||
Sbjct 61 CTGCGTGATGAAAATCGAGTTTTGAGGGCTCGACAAATTATGTGGGGTTGTATCGAAGGA 120
Query 354 AATATTGATGTGCATCAACTCGGTGAAAAAGATCTTCAAGATTTGAGTTCTGTTATTGAT 413
| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 ACTATTGATGTGTGTCAACTCGGTGAAAAGGATCTTCAAGATTTGAGTTCTGTTATTGAT 180
Query 414 AACTATCTCAATTGCGTTACTAA-CAGGTTTGAGAACCTTAAAAAGAATGGTGAGTCTTC 472
|||||||| || || ||| || |||| ||||| ||||||| |||||||||||| ||||
Sbjct 181 GACTATCTCGATAGCCTTA-AAAGCAGGATTGAGTACCTTAAGAAGAATGGTGAGCCTTC 239
Query 473 TTCTTCTTTACCTCCTCTTGTTGTTCCAGATCTTAATGTTGAAGAGGATGGGGACATTCC 532
||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 240 TTCTTCTTTACCTCCTCGTGTTCTTCAAGATCTTAATGTTGAAGAGGATGGGGACATTCC 299
Query 533 TTCCATTGATGGCAGC-ACCCACCAATCCGAAACTAATCGTCTCGCTGTAATAACTACCA 591
|||||| ||||||||| | | |||| || |||||||||||||||||| || |||||||
Sbjct 300 TTCCATGGATGGCAGCCATC-ACCAGTCTGAAACTAATCGTCTCGCTACCATCACTACCA 358
Query 592 CCGTTGCTGATGCTTGTGCTCCTAACATCACCAATAATCCTTAG 635
||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 359 CCG---CTGATGCTTGTGCGCCTAACATCACCAATAATCCTTAG 399
> AT1G59920.1 | Symbols: | MADS-box family protein | chr1:22059424-22059822
REVERSE LENGTH=399
Length=399
Score = 468 bits (253), Expect = 3e-131
Identities = 355/404 (88%), Gaps = 7/404 (2%)
Strand=Plus/Plus
Query 234 ATGGATCAAGAGGCTTTTTTGCGTCAGAGGATTGAAAGTGAACAAGCGCAATTGCAAAAA 293
|||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 1 ATGGATCAAGAGGCTTTTTTGCGTGAGAGGATTGAAAAAGCACAAGCGCAATTGCAAAAG 60
Query 294 TTGCGTGATGAGAACCGAGATTTGAAGGCTCGGGAAATTATGTGGGGTTGTCTCGGAGGA 353
|||||||||| || |||| ||||| |||||| ||||||||||||||||| ||| ||||
Sbjct 61 CTGCGTGATGAAAATCGAGTTTTGAGGGCTCGACAAATTATGTGGGGTTGTATCGAAGGA 120
Query 354 AATATTGATGTGCATCAACTCGGTGAAAAAGATCTTCAAGATTTGAGTTCTGTTATTGAT 413
| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 ACTATTGATGTGTGTCAACTCGGTGAAAAGGATCTTCAAGATTTGAGTTCTGTTATTGAT 180
Query 414 AACTATCTCAATTGCGTTACTAA-CAGGTTTGAGAACCTTAAAAAGAATGGTGAGTCTTC 472
|||||||| || || ||| || |||| ||||| ||||||| |||||||||||| ||||
Sbjct 181 GACTATCTCGATAGCCTTAA-AAGCAGGATTGAGTACCTTAAGAAGAATGGTGAGCCTTC 239
Query 473 TTCTTCTTTACCTCCTCTTGTTGTTCCAGATCTTAATGTTGAAGAGGATGGGGACATTCC 532
||||||||||||||||| |||| ||| ||||||||||||| |||||||||||||||||||
Sbjct 240 TTCTTCTTTACCTCCTCGTGTTCTTCAAGATCTTAATGTTAAAGAGGATGGGGACATTCC 299
Query 533 TTCCATTGATGGCAGC-ACCCACCAATCCGAAACTAATCGTCTCGCTGTAATAACTACCA 591
|||||| ||||||||| ||| |||| | ||||||||||||||| || || |||||||
Sbjct 300 TTCCATGGATGGCAGCCACC-ACCAGTTTGAAACTAATCGTCTCACTACCATCACTACCA 358
Query 592 CCGTTGCTGATGCTTGTGCTCCTAACATCACCAATAATCCTTAG 635
||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct 359 CCG---CTGATGCTTGTGCGCCTAACATCACAAATAATCCTTAG 399
> AT5G35120.1 | Symbols: | MADS-box family protein | chr5:13386852-13387175
REVERSE LENGTH=324
Length=324
Score = 372 bits (201), Expect = 3e-102
Identities = 283/322 (88%), Gaps = 7/322 (2%)
Strand=Plus/Plus
Query 234 ATGGATCAAGAGGCTTTTTTGCGTCAGAGGATTGAAAGTGAACAAGCGCAATTGCAAAAA 293
|||||||||||||||||||||||| ||| |||||||| | ||||||||||||||||||
Sbjct 1 ATGGATCAAGAGGCTTTTTTGCGTGAGAAGATTGAAAAAGCACAAGCGCAATTGCAAAAG 60
Query 294 TTGCGTGATGAGAACCGAGATT-TGAAGGCTCGGGAAATTATGTGGGGTTGTCTCGGAGG 352
||||||||||| || |||| || |||||||||| ||||||||||||||||| ||| |||
Sbjct 61 TTGCGTGATGAAAATCGAG-TTATGAAGGCTCGAAAAATTATGTGGGGTTGTATCGAAGG 119
Query 353 AAATATTGATGTGCATCAACTCGGTGAAAAAGATCTTC-AAGATTTGAGTTCTGTTATTG 411
||||||| ||||| ||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 120 AAATATTAATGTGTGTCAACTCGGTGAAAAGGATC-TCAAAGATTTGAGTTCTGTTATTG 178
Query 412 ATAACTATCTCAATTGCGTTACTAA-CAGGTTTGAGAACCTTAAAAAGAATGGTGAGTCT 470
|| ||||||||||| || ||| || |||| ||||| ||||||| |||||||||||||||
Sbjct 179 ATGACTATCTCAATAGCCTTA-AAAGCAGGGTTGAGTACCTTAAGAAGAATGGTGAGTCT 237
Query 471 TCTTCTTCTTTACCTCCTCTTGTTGTTCCAGATCTTAATGTTGAAGAGGATGGGGACATT 530
||||||||||||||||||| |||||| ||| ||||||| ||||||||||||| |||| ||
Sbjct 238 TCTTCTTCTTTACCTCCTCGTGTTGTCCCATATCTTAACGTTGAAGAGGATGCGGACGTT 297
Query 531 CCTTCCATTGATGGCAGC-ACC 551
||||| || ||||| ||| |||
Sbjct 298 CCTTCAATGGATGGTAGCCACC 319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31948917492
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5