BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925811
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66470.1 | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 | chr1:24795... 1461 0.0
AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 | chr5:150... 472 4e-132
> AT1G66470.1 | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 | chr1:24795214-24796988
FORWARD LENGTH=1399
Length=1399
Score = 1461 bits (791), Expect = 0.0
Identities = 892/940 (95%), Gaps = 10/940 (1%)
Strand=Plus/Plus
Query 4 ATCAAACTTATTAGTGTCTAATGGCACTCGTTAATGACCATCCCAACGAGACTAATTACT 63
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 93 ATCAAACTTATTAGTGTCTAATGGCACTCGTTAATGACCATCCCAACGAGACCAATTACT 152
Query 64 TGTCAAAACAAAATTCCTCCTCTTCCGAAGATCTCTCTTCGCCGGGATTGGATCAGCCAG 123
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 153 TGTCAAAACAAAATTCCTCCTCTTCCGAAGATCTCTCCTCGCCGGGACTGGATCAGCCAG 212
Query 124 ATGCAGCTTATGCCGGT------GGAGGAGGAGGCTCGGCTTCGAGCAGTAGCACTATGA 177
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 213 ATGCAGCTTATGCCGGTGGAGGAGGAGGAGGAGGCTCGGCTTCGAGCAGTAGCACGATGA 272
Query 178 ATTCAGATCATCAACAACATCAAGGGTTTGTGTTTTATCCATCCGGTGAAGATCCTCAAA 237
|||||||||||||||||||||| |||||||| ||||| |||||||||||||||| ||| |
Sbjct 273 ATTCAGATCATCAACAACATCAGGGGTTTGTATTTTACCCATCCGGTGAAGATCATCACA 332
Query 238 ACTCTTTGATGGATTTCAACGGATCATCATTTCTTAACTTCGATCATCACGAGAGCTTTC 297
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 333 ACTCTTTGATGGATTTCAACGGATCATCATTTCTTAACTTTGATCATCACGAGAGCTTTC 392
Query 298 CTCCTCCAGCCATAAGCTGTGGTGGTAATAGCGGTGCCGGCGGCTTCTCCTTCTTGGAGG 357
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 393 CTCCTCCAGCCATAAGCTGTGGTGGTAGTAGCGGTGGGGGCGGCTTCTCCTTCTTGGAGG 452
Query 358 GCAATAACATGAGCTACGGCTTCACAAATTGGAATCATCAACATCATATGGATATTATTA 417
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 453 GCAACAACATGAGCTACGGCTTCACAAACTGGAATCATCAACATCATATGGATATTATTA 512
Query 418 GCCCTAGATCCACCGAAACTCCCCAAGGCCAGAAAGATTGGTTATATTCTGATTCAACTG 477
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 513 GCCCTAGATCCACCGAAACTCCCCAAGGCCAGAAAGACTGGTTATATTCTGATTCAACTG 572
Query 478 TTGTAACCACTGGTTCTAGACACGAGTCTATGTCGCCTAAATCAGCTGGAAACAAACGTT 537
|||||||||||||||||||| |||||||| | ||||||||||| ||||||||||||||||
Sbjct 573 TTGTAACCACTGGTTCTAGAAACGAGTCTCTTTCGCCTAAATCCGCTGGAAACAAACGTT 632
Query 538 CTCAGACGGGAGAGAGCACTCAACCATCCAAGAAACCGAATAGTGGCGTGACTGGAAAGG 597
|||| |||||||||||||||||||| || ||||||| || ||| || ||||| ||||||
Sbjct 633 CTCACACGGGAGAGAGCACTCAACCGTCGAAGAAACTGAGTAGCGGTGTGACCGGAAAGA 692
Query 598 CCAAGCCTAAGCCAACAACTTCACCTAAAGATCCACAAAGCCTAGCAGCCAAGAATCGAA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 CCAAGCCTAAGCCAACAACTTCACCTAAAGATCCACAAAGCCTAGCAGCCAAGAATCGAA 752
Query 658 GAGAAAGGATAAGTGAACGTCTCAAGATATTGCAAGAACTTGTTCCCAATGGTACCAAGG 717
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 753 GAGAAAGGATAAGTGAACGTCTCAAGATATTGCAAGAACTTGTTCCCAATGGCACCAAGG 812
Query 718 TTGATTTGGTGACAATGCTTGAGAAGGCTATTAGTTATGTCAAGTTTCTTCAAGTACAAG 777
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 813 TTGATTTGGTGACAATGCTTGAAAAGGCTATTAGTTATGTCAAGTTCCTTCAAGTACAAG 872
Query 778 TTAAGGTACTT-GCAACCGATGAGTTTTGGCCGGCCCAAGGAGGAAAAGCTCCAGACATT 836
|||||||| || || |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 873 TTAAGGTA-TTAGCGACCGATGAGTTTTGGCCGGCTCAAGGAGGAAAAGCTCCTGACATT 931
Query 837 TCTCAAGTTAAAGACGCCATTGATGCTATCCTCTCCTCATCACAACGAGACAGGAATTCG 896
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 932 TCTCAAGTTAAAGACGCCATTGATGCCATTCTCTCCTCATCACAACGAGACAGGAATTCG 991
Query 897 AATCTGATCACCAATTAATGAAGGGTTT-ATTAATTAATA 935
|||||||||||||||||||||||||||| || | ||||||
Sbjct 992 AATCTGATCACCAATTAATGAAGGGTTTTATCA-TTAATA 1030
> AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 | chr5:15036197-15037574
FORWARD LENGTH=924
Length=924
Score = 472 bits (255), Expect = 4e-132
Identities = 377/437 (86%), Gaps = 4/437 (1%)
Strand=Plus/Plus
Query 452 AGATTGGTTATATTCTGATTCAACTGTTGTAACCACT-GGTTCTAGACACGAGTCTATGT 510
||| |||||||| |||| ||||||| |||||| || | ||||| || |||||||| | ||
Sbjct 453 AGACTGGTTATACTCTGGTTCAACTATTGTAAACA-TCGGTTCAAGGCACGAGTCCACGT 511
Query 511 CGCCTAAATC-AGCTGGAAACAAACGTTCTCAGACGGGAGAGAGCACTCAACCATCCAAG 569
| |||||| | ||||| || ||||| || |||||||||| ||| |||| || |||
Sbjct 512 CCCCTAAA-CTGGCTGGCAATAAACGGCCTTTCACGGGAGAGAACACACAACTTTCAAAG 570
Query 570 AAACCGAATAGTGGCGTGACTGGAAAGGCCAAGCCTAAGCCAACAACTTCACCTAAAGAT 629
|| |||| ||| || || ||||||| |||||||||| ||||||||||||||||||||
Sbjct 571 AAGCCGAGTAGCGGTACGAATGGAAAGATCAAGCCTAAGGCAACAACTTCACCTAAAGAT 630
Query 630 CCACAAAGCCTAGCAGCCAAGAATCGAAGAGAAAGGATAAGTGAACGTCTCAAGATATTG 689
||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| |||||
Sbjct 631 CCACAAAGCCTAGCAGCCAAGAACCGAAGAGAAAGGATAAGCGAACGCCTCAAGGTATTG 690
Query 690 CAAGAACTTGTTCCCAATGGTACCAAGGTTGATTTGGTGACAATGCTTGAGAAGGCTATT 749
||||||||||| || |||||||||||||| |||||||| || ||||||||||| || |||
Sbjct 691 CAAGAACTTGTACCGAATGGTACCAAGGTGGATTTGGTAACTATGCTTGAGAAAGCAATT 750
Query 750 AGTTATGTCAAGTTTCTTCAAGTACAAGTTAAGGTACTTGCAACCGATGAGTTTTGGCCG 809
| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 751 GGCTATGTAAAGTTTCTTCAAGTACAAGTTAAGGTACTTGCAGCCGATGAGTTTTGGCCG 810
Query 810 GCCCAAGGAGGAAAAGCTCCAGACATTTCTCAAGTTAAAGACGCCATTGATGCTATCCTC 869
|| |||||||| |||||||| |||||||||||||||||||| || ||||| || ||||||
Sbjct 811 GCACAAGGAGGGAAAGCTCCGGACATTTCTCAAGTTAAAGAAGCTATTGACGCAATCCTC 870
Query 870 TCCTCATCACAACGAGA 886
|| ||||||||||||||
Sbjct 871 TCATCATCACAACGAGA 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45713073770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5