BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925813
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43620.1 | Symbols: | Pre-mRNA cleavage complex II | chr5:1... 904 0.0
AT1G66500.1 | Symbols: | Pre-mRNA cleavage complex II | chr1:2... 872 0.0
> AT5G43620.1 | Symbols: | Pre-mRNA cleavage complex II | chr5:17522520-17524001
FORWARD LENGTH=1482
Length=1482
Score = 904 bits (489), Expect = 0.0
Identities = 810/950 (85%), Gaps = 82/950 (9%)
Strand=Plus/Plus
Query 6 TTGTTGAATCGCGAAGATGGCATCAAACGGATTCTTCTCTGCTCAAAGAAACGCACACCG 65
|||||||||||||||||||||||||||||||| ||||||||||| || | | |
Sbjct 118 TTGTTGAATCGCGAAGATGGCATCAAACGGATCCTTCTCTGCTC--AG--A-G---A--- 166
Query 66 TAACGCAAACGCTGGAACAACGTTGAAGAGACGAATCGACAACAATCGCGGTTACGGAAT 125
||||||||||||||||||||| |||||||||||| || ||||||||||||||||
Sbjct 167 -AACGCAAACGCTGGAACAACGATGAAGAGACGAA---ACGACAATCGCGGTTACGGTGG 222
Query 126 CGG-A---GAT-TTA-CAAGAGGAAAGGAACCGTTACGTGCCGCCGCAAAAACGTTTCAG 179
||| | ||| ||| |||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 223 CGGAATCGGATGTTATCAAGAGGAGAGGAACCGTTACGCGCCGCCGCAAAAACGTTTCAG 282
Query 180 ATCGCAAAC-GCAACCGCAAACGAATTTCCGATCTGGTCATATTCCTCTGTATCATCATC 238
||||| ||| |||| | | | || |||||||||||||||| ||||||||||||| |
Sbjct 283 ATCGC-AACTGCAA---C-AGC-AA-TTCCGATCTGGTCATAATCCTCTGTATCAT--T- 332
Query 239 ATGGTAG-AA-A-TAATAATAACATGTCTAGGGTTTCTTCTCAATCATATAACAATTACG 295
||||||| || | |||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 333 ATGGTAGTAATACTAATAATAACGTGTCTAGGGTTTCTTCTCAGTCATATAACAATTACG 392
Query 296 GTGTTGATGTGATTGCTTCTAATTCAAGTTTTCCATTACGTAACAATGATTCTAACATCA 355
|||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| ||
Sbjct 393 GTGTTGATGTGATTGCTTCTAATTCAAGTTTTGCTTTACCTAACAATGATTCTAACACCA 452
Query 356 ACAATTATCAGAAACCCTTTATTGTTGGTTATGGAAACCCTAATCCCCAAATTGTTCCTC 415
||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct 453 ACAATTATCAGAAACCC--T-TTGTTGTTTATGGAAACCCTAATCCCCAAATTGTTCCTC 509
Query 416 TTCCATTACCTTATCGTAAGCTTGAT-GATGATGATTCGTTGCCTGAATGGGTTCCGAAT 474
|||||||||||||||||||||||||| | | |||||||||||| |||||||||| |||
Sbjct 510 TTCCATTACCTTATCGTAAGCTTGATCCTTTA-GATTCGTTGCCTCAATGGGTTCCAAAT 568
Query 475 TCAA----G-A--A-CC--CTAACTC--CGAATTTTGTACC-AA-ACA-C-----TT--- 511
|||| | | | || || || ||||||||||||| || ||| | ||
Sbjct 569 TCAACTCCGAATTATCCTGTTAGGTCATCGAATTTTGTACCAAACACACCTGATTTTACG 628
Query 512 -ATGTTCAAAATCCGATGAATCATTCGAACATGGTTTCAGTTGTGTCACAAACGATGTCT 570
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 629 AATGTTCAAAATCCGATGAATCATTCGAACATGGTTTCAGTTGTGTCTCAATCGATG--- 685
Query 571 CATCATCAACCAATTGTTTTGAGCAAAGAATTGTCTGATTTACTTAG-CGTTCTTAGGAA 629
||||||||||||||||| |||||||||||| ||||||| ||||| | |||||| ||
Sbjct 686 ---CATCAACCAATTGTTTTAAGCAAAGAATTGACTGATTTGCTTAGTC-TTCTTAACAA 741
Query 630 TGAGAAAGAGAAGGAAACTTCAGAAGCAAGTAA-AAGTGATTCATTGCCCGTTGGATTAA 688
||||||||||||| ||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct 742 TGAGAAAGAGAAGAAAACTTCAGAAGCAAGTAATAA-TGATTCATTGCCTGTTGGATTAA 800
Query 689 GCTTTGATAATCCATCGTCG-TTGAATGTGCGACATGAATCTGTGATTAAGTCTCTGTAT 747
||||||| |||||||| ||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 801 GCTTTGACAATCCATCATCGCTT-AATGTTCGACATGAATCTGTGATTAAGTCTCTGTAT 859
Query 748 TCGGATATGCCGAGGCAATGTTCGTCGTGCGGGGTTAGGTTTAAATGTCAAGAGGAACAT 807
|| |||||||||||||||||| | ||||| ||||| || || ||||||||||| || |||
Sbjct 860 TCTGATATGCCGAGGCAATGTACTTCGTGTGGGGTGAGATTCAAATGTCAAGAAGAGCAT 919
Query 808 AGCAAGCATATGGATTGGCATGTAAGGAAGAACAGGAT-GGCT-AAAACCACTATGAGA- 864
|| || |||||||||||||| ||||||||||||||| | || | |||||||||| |||
Sbjct 920 AGTAAACATATGGATTGGCACGTAAGGAAGAACAGG-TCGG-TGAAAACCACTACAAGAC 977
Query 865 TTGGGCCAGCAACCGCAGAAATCGCGGGGATGGTTGGTAAGCGCATCTTT 914
|||| | |||||||| |||||||| |||||||||| | || ||||||||
Sbjct 978 TTGGTC-AGCAACCGAAGAAATCGAGGGGATGGTTAGCGAGTGCATCTTT 1026
> AT1G66500.1 | Symbols: | Pre-mRNA cleavage complex II | chr1:24811149-24812650
REVERSE LENGTH=1502
Length=1502
Score = 872 bits (472), Expect = 0.0
Identities = 816/965 (85%), Gaps = 91/965 (9%)
Strand=Plus/Plus
Query 6 TTGTTGAATCGCGAAGATGGCATCAAACGGATTC-TTCTCTGCTCAAAGAAACGCACACC 64
||||| ||||| ||||||||||||||||||| || |||||||||| || | | |
Sbjct 123 TTGTTTAATCGTGAAGATGGCATCAAACGGA-TCTTTCTCTGCTC--AG--A-G---A-- 171
Query 65 GTAACGCAAACGCTGGAACAACGTTGAAGAGACGAATCGACAACAATCGCGGTTA----- 119
|||||||||||| |||||||| |||||||| ||| | | |||||||||||||
Sbjct 172 --AACGCAAACGCTAGAACAACGATGAAGAGAAGAA--G-CGACAATCGCGGTTACGGTG 226
Query 120 -CGGAATCGGAGATTTA-CAAGAGGAAAGGAACCGTTACGTGCCGCCGCAAAAACGTTTC 177
||||||||||| ||| |||||||| | ||||||||||| |||||||||||||||||||
Sbjct 227 GCGGAATCGGAG-GTTATCAAGAGGAGACGAACCGTTACGCGCCGCCGCAAAAACGTTTC 285
Query 178 AGATCGCAAACGCAACCGCAAACGAATTTCCGATCTGGTCATATTCCTCTGTATCATCAT 237
||||| ||| ||||| | | | || |||||||||||||||| ||||||||||||||||
Sbjct 286 AGATCACAAGCGCAA---C-AGC-AA-TTCCGATCTGGTCATAATCCTCTGTATCATCAT 339
Query 238 CATGGTAGAAATAATAATAACATGTCTAGGGTTTCTTCTCAATCATATAACAATTACGGT 297
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 340 CATGGTAGTAATAATAATAACGTGTCTAGGGTTTCTTCTCAATCATATAACAATTGCGGT 399
Query 298 GTTGATGTGATTGCTTCTAATTCAAGTTTTCCATTACGTAACAATGATTCTAACATCAAC 357
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 400 GTTGATGTGATTGCTTCTAATTCAAGTTTTGCATTACGTAACAATGATTCTAACACCAAC 459
Query 358 AATTATCAGAAACCCTTTATTGTTGGTTATGGAAACCCTAATCCCCAAATTGTTCCTCTT 417
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 460 AATTATCAGAAACCCTTTGTTGCTGGTTATGGAAACCCTAATCCCCAAATTGTTCCTCTT 519
Query 418 CCATTACCTTATCGTAAGCTTGATG---A----T-GAT-GATTCGTTGCCTGAATGGGTT 468
||||||||||||||||||||||||| | | | |||||||| ||||| ||||||
Sbjct 520 CCATTACCTTATCGTAAGCTTGATGACAATCTCTCTTTAGATTCGTTACCTGATTGGGTT 579
Query 469 CCGAATTCAAGAA-CC---CT----A--A--C-------TC--CGAATTTTGTACCAAAC 507
||||||||||||| || || | | | || |||||||||||||||||
Sbjct 580 CCGAATTCAAGAACCCTAACTCCGAATTATCCTGTTAGGTCATCGAATTTTGTACCAAAC 639
Query 508 A---C-----TT----ATGTTCAAAATCCGATGAATCATTCGAACATGGTTTCAGTTGTG 555
| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 ACTCCTGTTTTTACGAATGTTCAAAATCCGATGAATCATTCGAACATGGTTTCAGTTGTG 699
Query 556 TCACAAACGATGTCTCAT-CATCAACCAATTGTTTTGAGCAAAGAATTGTCTGATTTACT 614
|| | | | ||| || |||||||||||||||||||||||||||||| ||||||| ||
Sbjct 700 TCTC--A--A--TCT-ATGCATCAACCAATTGTTTTGAGCAAAGAATTGACTGATTTGCT 752
Query 615 TAG-CGTTCTTAGGAATGAGAAAGAGAAGGAAACTTCAGAAGCAAGTAAAAGTGATTCAT 673
||| | |||||| ||||||||||||||| |||||| |||||||||||| |||||||| |
Sbjct 753 TAGTC-TTCTTAACAATGAGAAAGAGAAGAAAACTTTAGAAGCAAGTAATAGTGATTCTT 811
Query 674 TGCCCGTTGGATTAAGCTTTGATAATCCATCGTC-GTTGAATGTGCGACATGAATCTGTG 732
|||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 812 TGCCTGTTGGATTAAGCTTTGATAATCCATCGTCACTT-AATGTTCGACATGAATCTGTG 870
Query 733 ATTAAGTCTCTGTATTCGGATATGCCGAGGCAATGTTCGTCGTGCGGGGTT-AGGTTTAA 791
||||||||||||||||| ||||||||||| |||||||| ||||| ||| || || || ||
Sbjct 871 ATTAAGTCTCTGTATTCTGATATGCCGAGACAATGTTCATCGTGTGGG-TTGAGATTCAA 929
Query 792 ATGTCAAGAGGAACATAGCAAGCATATGGATTGGCATGTAAGGAAGAACAGGAT-GGCT- 849
|||||||| || ||||| || || ||||||||||||||||||||||||||| | || |
Sbjct 930 GTGTCAAGAAGAGCATAGTAAACACATGGATTGGCATGTAAGGAAGAACAGG-TCGG-TG 987
Query 850 AAAACCACTATGAGATTGGGCCAGCAACCGCAGAAATCGCGGGGATGGTTGGTAAGCGCA 909
|||||||||| ||| |||| ||||||||| |||||||| |||||||||| | ||| |||
Sbjct 988 AAAACCACTACAAGACTGGGTCAGCAACCGAAGAAATCGAGGGGATGGTTAGCAAGTGCA 1047
Query 910 TCTTT 914
|||||
Sbjct 1048 TCTTT 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45863776211
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5