BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925815

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43620.1 | Symbols:  | Pre-mRNA cleavage complex II | chr5:1...   243    6e-64
  AT1G66500.1 | Symbols:  | Pre-mRNA cleavage complex II | chr1:2...   231    1e-60


> AT5G43620.1 | Symbols:  | Pre-mRNA cleavage complex II | chr5:17522520-17524001 
FORWARD LENGTH=1482
Length=1482

 Score =  243 bits (131),  Expect = 6e-64
 Identities = 163/179 (91%), Gaps = 0/179 (0%)
 Strand=Plus/Plus

Query  1     GCCATGAAGCTGATGATTGGATGTACAAAGGTGCAGTCTACTTAACCAAGAACGGTCGTA  60
             |||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||
Sbjct  1197  GCCATGAAGCTGATGACTGGATGTACAAAGATGCAGTCTACTTAACCAAGAATGGTCGTA  1256

Query  61    TAGTTCACGCTAAGTGTATGCCTGCACCCCGACCAGCAAATGATACGAGAGAGCCGTCTA  120
             ||||||| | |||||||||||||| ||||||||| || || |||  |||||||||||| |
Sbjct  1257  TAGTTCATGTTAAGTGTATGCCTGAACCCCGACCTGCTAAGGATTTGAGAGAGCCGTCGA  1316

Query  121   GGGTAATGTCTGTTACAGTTCCATCGGTTGCGAGTGCAATAGTCTGCTGATTGAGATTT  179
             |||||||||||||||||||||||||||||||||  || ||| |||||||||||||||||
Sbjct  1317  GGGTAATGTCTGTTACAGTTCCATCGGTTGCGAAAGCTATACTCTGCTGATTGAGATTT  1375


> AT1G66500.1 | Symbols:  | Pre-mRNA cleavage complex II | chr1:24811149-24812650 
REVERSE LENGTH=1502
Length=1502

 Score =  231 bits (125),  Expect = 1e-60
 Identities = 161/179 (90%), Gaps = 0/179 (0%)
 Strand=Plus/Plus

Query  1     GCCATGAAGCTGATGATTGGATGTACAAAGGTGCAGTCTACTTAACCAAGAACGGTCGTA  60
             ||||||||| ||||||||||||||| |||| ||||||||||||||||||||| |||||||
Sbjct  1220  GCCATGAAGATGATGATTGGATGTATAAAGATGCAGTCTACTTAACCAAGAATGGTCGTA  1279

Query  61    TAGTTCACGCTAAGTGTATGCCTGCACCCCGACCAGCAAATGATACGAGAGAGCCGTCTA  120
             ||||||| | |||||||||||||| ||||||||| || || |||  ||||||||| || |
Sbjct  1280  TAGTTCATGTTAAGTGTATGCCTGAACCCCGACCTGCTAAGGATTTGAGAGAGCCTTCGA  1339

Query  121   GGGTAATGTCTGTTACAGTTCCATCGGTTGCGAGTGCAATAGTCTGCTGATTGAGATTT  179
             |||||||||||||||||||||||||||||||||  || |||| ||||||||||||||||
Sbjct  1340  GGGTAATGTCTGTTACAGTTCCATCGGTTGCGAAAGCTATAGCCTGCTGATTGAGATTT  1398



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8400325617


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5