BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925834

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G66520.1 | Symbols: pde194 | formyltransferase, putative | c...   353    5e-97


> AT1G66520.1 | Symbols: pde194 | formyltransferase, putative | 
chr1:24816128-24818744 REVERSE LENGTH=1321
Length=1321

 Score =  353 bits (191),  Expect = 5e-97
 Identities = 224/240 (93%), Gaps = 2/240 (1%)
 Strand=Plus/Plus

Query  36   GTTGCAGCCATTGTTACACATG-CTCCATCAAGTAGAGATAGTGGaaaaaaaGTTTTGCC  94
            |||||||  ||||||||||| | |||||||||| |||||||| || |||||||| |||||
Sbjct  217  GTTGCAGGTATTGTTACACA-GCCTCCATCAAGGAGAGATAGGGGTAAAAAAGTGTTGCC  275

Query  95   TTCTCCCGTAGCGCAATATGCTCTTGATAAAGGCTTACCTTCTCATCTCATTTTCTCCCC  154
            ||| || ||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct  276  TTCACCAGTAGCGCAATACGCTCTTGATAAAGGCTTACCTTCTGATCTCATTTTCTCCCC  335

Query  155  TGAGAAGGCAGGAGATGAAGCATTCTTATCGGCTTTAAGAGAGTTGCAACCTGCGCTTTG  214
            |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct  336  TGAGAAGGCAGGAGATGAAGCATTTTTATCGGCTTTAAGAGAGTTGCAACCTGAGCTTTG  395

Query  215  TATTACAGCAGGTTATGGGAATATTTTGCCTACTAAGTTCCTTAAGATTCTGGTACATGG  274
            ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  396  TATTACAGCAGCTTATGGGAATATTTTGCCTACTAAGTTCCTTAAGATTCCGGTACATGG  455



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15281395696


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5