BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925834
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66520.1 | Symbols: pde194 | formyltransferase, putative | c... 353 5e-97
> AT1G66520.1 | Symbols: pde194 | formyltransferase, putative |
chr1:24816128-24818744 REVERSE LENGTH=1321
Length=1321
Score = 353 bits (191), Expect = 5e-97
Identities = 224/240 (93%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 36 GTTGCAGCCATTGTTACACATG-CTCCATCAAGTAGAGATAGTGGaaaaaaaGTTTTGCC 94
||||||| ||||||||||| | |||||||||| |||||||| || |||||||| |||||
Sbjct 217 GTTGCAGGTATTGTTACACA-GCCTCCATCAAGGAGAGATAGGGGTAAAAAAGTGTTGCC 275
Query 95 TTCTCCCGTAGCGCAATATGCTCTTGATAAAGGCTTACCTTCTCATCTCATTTTCTCCCC 154
||| || ||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 276 TTCACCAGTAGCGCAATACGCTCTTGATAAAGGCTTACCTTCTGATCTCATTTTCTCCCC 335
Query 155 TGAGAAGGCAGGAGATGAAGCATTCTTATCGGCTTTAAGAGAGTTGCAACCTGCGCTTTG 214
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 336 TGAGAAGGCAGGAGATGAAGCATTTTTATCGGCTTTAAGAGAGTTGCAACCTGAGCTTTG 395
Query 215 TATTACAGCAGGTTATGGGAATATTTTGCCTACTAAGTTCCTTAAGATTCTGGTACATGG 274
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 396 TATTACAGCAGCTTATGGGAATATTTTGCCTACTAAGTTCCTTAAGATTCCGGTACATGG 455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15281395696
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5