BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925838

Length=1409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G09140.1 | Symbols:  | Protein of unknown function (DUF674) ...  73.1    7e-12


> AT3G09140.1 | Symbols:  | Protein of unknown function (DUF674) 
| chr3:2800853-2802795 REVERSE LENGTH=1856
Length=1856

 Score = 73.1 bits (39),  Expect = 7e-12
 Identities = 79/98 (81%), Gaps = 4/98 (4%)
 Strand=Plus/Plus

Query  27   AAAGATAAGTCTGAAAATTCT-AGTTGATAAAGAGAAAAACAAGATTGTTTTGG-TGGAA  84
            |||| ||||| ||| | |||| | | ||| ||  ||| |||||| |||| |||| | |||
Sbjct  46   AAAGCTAAGTGTGAGACTTCTCA-TAGATGAACTGAAGAACAAGGTTGTCTTGGCT-GAA  103

Query  85   GCACGTAAAGATTTTGTTGATGTTCTCTTTAGTTTTCT  122
             |  |||| |||||||||||||||||||||||||||||
Sbjct  104  TCTGGTAAGGATTTTGTTGATGTTCTCTTTAGTTTTCT  141



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 69427353735


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5