BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925850

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G66610.1 | Symbols:  | TRAF-like superfamily protein | chr1:...   150    1e-35


> AT1G66610.1 | Symbols:  | TRAF-like superfamily protein | chr1:24849716-24851450 
REVERSE LENGTH=1101
Length=1101

 Score =  150 bits (81),  Expect = 1e-35
 Identities = 128/149 (86%), Gaps = 9/149 (6%)
 Strand=Plus/Plus

Query  374   CACCTTCTGCTCCAGGAGCTGGAGAGTTCTCGTATGA--TATCTTCTGCTTGACGGAAGG  431
             |||||||||||||||||| |||| ||||||| |||||  ||||  || || ||||| |||
Sbjct  857   CACCTTCTGCTCCAGGAGTTGGAAAGTTCTCCTATGAGCTATC--CTACTCGACGGCAGG  914

Query  432   TAACGCTATGACGTTTGGATCGTCGAAGATGAATATGATTCAGAAAGTGAGCTTCCAAAC  491
             |||| || |||||||| |||||||| ||||||||  ||||||||||||||||||||||||
Sbjct  915   TAACACTTTGACGTTTAGATCGTCGGAGATGAATCGGATTCAGAAAGTGAGCTTCCAAAC  974

Query  492   TCCG-A-A-GGACTTCATGTT-AGTTCCT  516
             |||| | | |||||||||||| | |||||
Sbjct  975   TCCGGAGAAGGACTTCATGTTTA-TTCCT  1002



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26272458881


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5