BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925855
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66660.2 | Symbols: | Protein with RING/U-box and TRAF-like... 1177 0.0
> AT1G66660.2 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr1:24861876-24863368 REVERSE LENGTH=1263
Length=1263
Score = 1177 bits (637), Expect = 0.0
Identities = 943/1084 (87%), Gaps = 47/1084 (4%)
Strand=Plus/Plus
Query 3 CATCGGAGGAGATTTA-GAGATGGCGATATCTGGA-GAAGACGACGGACGTAGAGGAGCC 60
|||||||||||||||| || ||||| | ||||||| ||| ||||||||| | | |||||
Sbjct 18 CATCGGAGGAGATTTAGGA-ATGGCAAGATCTGGAGGAA-ACGACGGAC--ATA-GAGCC 72
Query 61 TTCGACGA-TCGTCTCTCGAAGAGGCAACGACTTCCTCC-TCT--CGATGAATCTGAAGA 116
|||| | |||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 73 GGCGAC-AGTCGTCTCTCGAAGAGGCAACGACTTCCTCCTTCTCCCGATGAATCTGAAGA 131
Query 117 GGAATTAGACGAAGACTTGTTCGAAGATTCAAGTACTTTAGACGGATACgaagatggaga 176
|||||||||| ||| ||||||||||| |||||| |||||| |||||||||||||||||
Sbjct 132 GGAATTAGACCCAGAGTTGTTCGAAGAGCCAAGTAATTTAGAAGGATACGAAGATGGAGA 191
Query 177 attcgaag-a-a-gaagaag-a-t-------gaagaagaTG--TT---ACTGGAATGGCG 219
|||||||| | | ||||||| | | |||||||| | || | |||| | |
Sbjct 192 ATTCGAAGAAGATGAAGAAGAATTCGAAGAAGAAGAAGAAGAATTAGAAGAGGAA-GAAG 250
Query 220 AC-AATTGGTAACAATTTCGAAG--ATCTGGTA--AC-GAATGAACAATCTGGAAGTCCT 273
|| || | || || |||| | | | || || | ||||||||||||||||||||
Sbjct 251 ACGAAGAAG-AAGAA-GAAGAAGAAAAC-GTTACTACTG-ATGAACAATCTGGAAGTCCT 306
Query 274 AAATCATCCCAATCGGTGAAGCTACAGAGCTCAGATGTTCTCGATTGTCCTACTTGTTGT 333
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 307 AAATCATCCCAACCGGTGAAGCTTCAGAGCTCAGATGTTCTCGATTGTCCTACTTGTTGT 366
Query 334 GAGCCACTCAAGAGACCAATCTATCAGTGTAGTAATGGGCATCTATCTTGTTCGTCGTGC 393
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 367 GAACCACTCAAGAGACCAATCTATCAGTGTAGTAATGGGCATCTAGCTTGTTCGTCATGC 426
Query 394 TGCAAAAAATTGAACAAGAGATGCTCGTTCTGTAGATGTAACATCGGGGATATACGATGC 453
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TGCCAAAAATTGAACAAGAAATGCTCGTTCTGTAGATGTAACATCGGGGATATACGATGC 486
Query 454 AGAGCGATGGAGAAGGTTATTGAATCATCTATTGTCCCGTGTCCAAACGCGAAATACGGG 513
|||||||||||||||||||| ||| ||||||| |||||||||||||| |||||| |||||
Sbjct 487 AGAGCGATGGAGAAGGTTATCGAAGCATCTATAGTCCCGTGTCCAAATGCGAAACACGGG 546
Query 514 TGTAAAGAAACAACCACGTATTGTAATCAATCTAGCCATGACAAGGTTTGT--GTTTTCG 571
||||||||||| ||||||||||||||||| || |||||||| |||||||| |||| |
Sbjct 547 TGTAAAGAAACCACCACGTATTGTAATCAGTCAAGCCATGAGAAGGTTTGCAAGTTT--G 604
Query 572 CCCGTTGTTCTTGCCCTGTACCAAACTGCAATTACGTTGGGT-CATACGCGAATATCAAA 630
||| ||||||||||||||| | |||||||| ||||| | || ||||| ||||| |||||
Sbjct 605 TCCGATGTTCTTGCCCTGTATCGAACTGCAACTACGT-GAGTTCATACTCGAATCTCAAA 663
Query 631 AGCCATGCTTGTAGTACTGCACACGCTTGGGATGAGGATGACTTCCTCATCCCGTTTGTG 690
||||||||||||||||||||||||| ||||| ||| || ||| ||| | ||| ||| |||
Sbjct 664 AGCCATGCTTGTAGTACTGCACACGTTTGGGGTGAAGACGACATCCACTTCCAGTTAGTG 723
Query 691 TTTGACTGTCCTACAATCTTTAACATGAACCTTGGTAGGAAGAAGATGGTTGTTTTTAAG 750
||||| |||||| ||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 724 ATTGACCGTCCTAGAATTTTTAACATGAACCTTGGTAGGAAGAAGACGGTTGTATTTAAG 783
Query 751 GAAGAGAAAGAGGGTGATTTGATTGTAGTTCAGGCTTTTAAGGGATTGGAAGGTGTGTAT 810
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 784 GAAGAGAAAGAGGGTGATTTGATTGTTGTTCAGGCTTTCAAGGGATTGGAAGGTGTTTAT 843
Query 811 GTGACTGTAAACCGTATTGCACATATGGCTCCGGGAATACGGGAATTCTCGTGTAGTCTG 870
|||||||| |||||||||||||||||||||||||||||||| || || || |||||| ||
Sbjct 844 GTGACTGTCAACCGTATTGCACATATGGCTCCGGGAATACGTGACTTGTCATGTAGTTTG 903
Query 871 GCTAAACTCAACCAGTATAGCACACTAAGGATTGGATCAATGGTGAAGAAAATTCAGAAA 930
||||| |||||| |||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 904 GCTAAGCTCAACGAGTATAGCACACTAAGGAGTGGATCGTTGGTGAAGAAAATTCAGAAA 963
Query 931 GTGAGAGAGCAAATGCATCCTGAAGACGACGTGATGTGGATTCCGCCTAAAATGTTGAGC 990
||||||||| ||||||||| |||||| ||| |||||||||| ||||||||||||||||||
Sbjct 964 GTGAGAGAGAAAATGCATCTTGAAGATGACTTGATGTGGATACCGCCTAAAATGTTGAGC 1023
Query 991 AGCGAGCACTGGAAGATGGAGATTTGCATCGGCTATGGGTATAAATATATTCACATTTGA 1050
| || |||||||||||| |||||||||| | |||||| ||||||| ||||||||| |||
Sbjct 1024 GGTGACCACTGGAAGATGCAGATTTGCATTGCCTATGGATATAAATTTATTCACATCTGA 1083
Query 1051 -GAA 1053
|||
Sbjct 1084 AGAA 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52409368980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5