BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925857
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66670.1 | Symbols: CLPP3, NCLPP3 | CLP protease proteolytic... 1448 0.0
> AT1G66670.1 | Symbols: CLPP3, NCLPP3 | CLP protease proteolytic
subunit 3 | chr1:24863785-24865702 REVERSE LENGTH=1196
Length=1196
Score = 1448 bits (784), Expect = 0.0
Identities = 897/952 (94%), Gaps = 5/952 (1%)
Strand=Plus/Plus
Query 25 aaTGGAGATGAGTTTGCGACTCGCTTCATCTTCAACCTCAAACCCAATTTGTCTAATAAA 84
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 56 AATGGAGATGAGTTTGCGTCTCGCTTCATCTTCAACCTCAAACCCAATTTGTCTACTAAA 115
Query 85 TCCAGGAAAAAATCTTAATTTCCCAATCCGAAACCAGAGAATCCCTAAAACAACGAAACC 144
|| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 116 CCCTGGAAAAAACCTTAATTTCCCAATCCGAAACCATAGAATCCCTAAAACTTCGAAACC 175
Query 145 CTTTTGCGTTAGGTCTTCAATGAGCTCATCT-AA--ACCCAGACAAACCTTATCTAGTAA 201
|||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 176 CTTTTGCGTTAGGTCTTCAATGAGCTTGTCTAAACCACCCAGACAAACCTTATCTAGTAA 235
Query 202 CTGGGATGTCTCTAGCTTCTCCGTTGATTCCGTTGCTCAATCTCCTTCACGGCTTCCAAG 261
||||||||| |||||||||||| |||||||||||||||||||||||||| | || |||||
Sbjct 236 CTGGGATGTATCTAGCTTCTCCATTGATTCCGTTGCTCAATCTCCTTCAAGACTCCCAAG 295
Query 262 TTTCGAAGAACTCGACACCACAAACATGTTGCTTCGTCAAAGAATCGTCTTTTTGGGTTC 321
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 296 TTTCGAAGAACTCGATACCACCAACATGTTGCTCCGTCAAAGAATCGTCTTTTTGGGTTC 355
Query 322 TCAGGTGGATGATATGACTGCGGATTTGGTTATAAGTCAGCTTTTGTTGCTAGATGCTGA 381
|||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 356 TCAGGTTGATGATATGACGGCGGATTTGGTTATAAGTCAGCTATTGTTACTAGATGCTGA 415
Query 382 GGACTCAGAGAGAGACATTACGCTGTTTATCAATTCGCCCGGTGGATCTATTACTGCTGG 441
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 416 GGACTCAGAAAGAGACATTACGCTTTTTATCAATTCACCCGGTGGATCTATTACTGCTGG 475
Query 442 GATGGGAATATATGATGCAATGAAACAATGTAAGGCGGATGTATCGACTGTTTGCTTAGG 501
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 476 GATGGGAATATATGATGCAATGAAACAATGTAAGGCGGATGTATCTACTGTTTGCTTAGG 535
Query 502 ACTAGCTGCATCTATGGGTGCGTTTCTCCTTGCTTCTGGTTCAAAAGGGAAACGGTATTG 561
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 536 GTTAGCTGCATCTATGGGTGCGTTTCTTCTTGCTTCTGGTTCAAAAGGGAAACGGTATTG 595
Query 562 CATGCCTAACTCTAAAGTTATGATCCATCAGCCACTTGGTACCGCTGGAGGCAAAGCAAC 621
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 596 TATGCCTAACTCTAAAGTTATGATCCATCAGCCACTTGGTACTGCTGGAGGCAAAGCAAC 655
Query 622 GGAAATGAGCATACGCATAAGAGAAATGATGTACCACAAGATTAAACTAAACAAGATCTT 681
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 656 GGAAATGAGCATACGTATAAGAGAAATGATGTACCACAAGATTAAACTTAACAAAATCTT 715
Query 682 CTCTAGAATCACCGGAAAGCCCGAATCAGAGATCGAAGGTGACACAGACCGTGATAATTT 741
|||||||||||| || ||||| ||||||||||||||| ||||||||||||||||||| ||
Sbjct 716 CTCTAGAATCACTGGGAAGCCTGAATCAGAGATCGAAAGTGACACAGACCGTGATAACTT 775
Query 742 CTTGAATCCATGGGAAGCGAAAGAATATGGTTTGATCGATGCTGTAATCGATGATGGGAA 801
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 776 CTTGAATCCATGGGAGGCGAAAGAATATGGTTTGATCGACGCTGTAATCGATGATGGGAA 835
Query 802 ACCAGGACTAATCGCTCCAATCGGAGATGGCACTCCTCCTCCGAAAACCAAAGTCTGGGA 861
||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 836 ACCGGGACTAATCGCTCCAATTGGAGATGGTACTCCTCCTCCTAAAACCAAAGTCTGGGA 895
Query 862 TCTTTGGAAAGTTGAAGGAACCAAGAAAGACAACACTAACTTGCCATCCGAGCGCTCAAT 921
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 896 TCTTTGGAAAGTCGAAGGAACCAAGAAAGACAACACTAACTTGCCATCTGAGCGCTCCAT 955
Query 922 GACACAGAATGGTTATGCTGCCATTGAATAGAACTTGT-GTTCCAGCGTTTA 972
|||||||||||||||||| |||||||||||||||| || ||| |||||||||
Sbjct 956 GACACAGAATGGTTATGCCGCCATTGAATAGAACT-GTTGTTGCAGCGTTTA 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47571737209
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5