BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925861

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G66720.1 | Symbols:  | S-adenosyl-L-methionine-dependent met...   375    1e-103


> AT1G66720.1 | Symbols:  | S-adenosyl-L-methionine-dependent methyltransferases 
superfamily protein | chr1:24881180-24882480 
FORWARD LENGTH=1115
Length=1115

 Score =  375 bits (203),  Expect = 1e-103
 Identities = 299/343 (87%), Gaps = 15/343 (4%)
 Strand=Plus/Plus

Query  31    GTGTAATCGAGCAAGACAAGGTGGACTCTTTCAACATCACACTCTACATTGCAGAGGAAG  90
             |||| || ||| ||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct  787   GTGTCATTGAGAAAGACAAGGTGGAGTCTTTCAACATCACACTCTACATTGCAGAAGAAG  846

Query  91    GCGAGTTGAGGGCCTTGAGGCAAATCATAGAAGAGAACGGAAAGTTCACAATAAAGGCTT  150
             ||||||||||| |    |   || |||||||||||||||| |||||||||||  |||| |
Sbjct  847   GCGAGTTGAGG-C----A---AA-TCATAGAAGAGAACGGGAAGTTCACAATTGAGGCAT  897

Query  151   TCGAGGATATCATTCAGCCAAGTGGGGAGACG-TTGGACCCCAAGATCTTGGCTGTCTAC  209
             |||||||||||||||||||||  |||||| || ||| ||||||| ||||||||||||| |
Sbjct  898   TCGAGGATATCATTCAGCCAAACGGGGAGTCGCTTG-ACCCCAAAATCTTGGCTGTCTCC  956

Query  210   TTTAAGTGTGCCTTTAGAGGTATCCTATCCACACATTTTGGAGCCGAAACCATGAGGAAA  269
             || |||| ||||||| |||||||||| ||| ||||||||||||||||| | |||| ||||
Sbjct  957   TTGAAGTCTGCCTTTGGAGGTATCCTCTCCGCACATTTTGGAGCCGAAGCGATGATGAAA  1016

Query  270   GCCTTTGAGCTCGTTGAGTCCAAGGCACACCTAGAATTTTCTCGCCTCCAGAAAGCCAAA  329
             |||||||||||||| ||| |||||||||||| |||||||||||| |||||||| ||||||
Sbjct  1017  GCCTTTGAGCTCGTCGAGGCCAAGGCACACCAAGAATTTTCTCGTCTCCAGAATGCCAAA  1076

Query  330   CCCGCAATGCAATACCTCATATATCGTACTTCGTAAGAACTGA  372
             ||| ||||||||||||||||    ||||||||| |||||||||
Sbjct  1077  CCCACAATGCAATACCTCAT----CGTACTTCGCAAGAACTGA  1115



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18146657389


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5