BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925862
Length=758
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66720.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 878 0.0
AT1G66700.1 | Symbols: PXMT1 | S-adenosyl-L-methionine-dependen... 562 2e-159
AT1G66690.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 560 6e-159
> AT1G66720.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:24881180-24882480
FORWARD LENGTH=1115
Length=1115
Score = 878 bits (475), Expect = 0.0
Identities = 566/609 (93%), Gaps = 9/609 (1%)
Strand=Plus/Plus
Query 1 GAGAGAAAAGAAA--GAGAG-AATAATGTCTCCTACTCCAGAATGGGTCATGGTTGGAGG 57
|||| |||||||| ||| | ||||||||| |||||||||||||||||||||||||||||
Sbjct 32 GAGAAAAAAGAAAGCGAGCGAAATAATGTCACCTACTCCAGAATGGGTCATGGTTGGAGG 91
Query 58 AGAAGGTCCTGAGAGTTACAAGCAGCATTCTTCGTATCAAAGAGATTTGCTGAAAGCAGC 117
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 92 AGAAGGTCCTGAGAGTTACAAGCAGCATTCTTCGTATCAGAGAGATTTGCTGAAAGCAGC 151
Query 118 AAAGGATAAAATAAACGCGGTGATCTCAGCAAACCTCAGCCTCGATTTGATTTCGAATCG 177
|||||||||||||||||||||||| ||| | |||||||||||| ||||||||||||||||
Sbjct 152 AAAGGATAAAATAAACGCGGTGATTTCAACGAACCTCAGCCTCAATTTGATTTCGAATCG 211
Query 178 GTTTAGTGTTGCGGATTTCGGTTGTGCGAGTGGACCTAACACTTTTGTGGCAGTCCAAAA 237
||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 212 GTTCAGTGTTGCGGATTTCGGTTGTGCAAGTGGACCTAACACTTTTGTCGCAGTCCAAAA 271
Query 238 CATAATAGATGCCGTGGAAGAGAAGTATCTTAGAGAAACCGGACAAAACCCGT-CAGATA 296
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 272 CATAATAGATGCCGTGGAAGAGAAGTATCTTAGAGAAACCGGACAAAACCCGGAC-GATA 330
Query 297 ACATCGAGTTCCAAGTCCTCTTCAACGACTTAAGCAATAACGATTTCAACACTCTCTTCC 356
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 ACATCGAGTTCCAGGTCCTCTTCAACGACTTAAGCAATAACGATTTCAACACTCTCTTCC 390
Query 357 -GAGCACTTCCTTC-GGACAGGAGATACTACAGTGCTGGCGTTCCCGATTCCTTCTTCGA 414
| | ||||||||| || |||||||||||| ||||||| | |||| | ||||||||| ||
Sbjct 391 AGGG-ACTTCCTTCTGG-CAGGAGATACTATAGTGCTGCCATTCCTGGTTCCTTCTTTGA 448
Query 415 CCGTGTTCTTCCTAAACAGAGTATCCACATAGGAGTCATGAATTACGCTTTTCAGTTCAC 474
||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||
Sbjct 449 CCGTGTTCTTCCTAAGCATAGTATCCACATAGGAGTCATGAATTATGCTTTTCAATTCAC 508
Query 475 CTCCAAAATCCCCAAAGGGATCTCCGACCGCAACTCTCCCCTGTGGAACAGAGACATACA 534
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 509 CTCCAAAATCCCCAAAGGGATCTCAGACCGCAACTCTCCCCTCTGGAACAGAGACATGCA 568
Query 535 TTGCACTGGCTTCAACAACAAGGTCAAGAAGGCATATTTTGATCAGTACTCGCTCGACTC 594
|||||| || || ||||||||||||||||| || ||| ||||||||| ||||||||||||
Sbjct 569 TTGCACCGGATTTAACAACAAGGTCAAGAAAGCGTATCTTGATCAGTTCTCGCTCGACTC 628
Query 595 CAAGAATAT 603
|||||||||
Sbjct 629 CAAGAATAT 637
> AT1G66700.1 | Symbols: PXMT1 | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein | chr1:24873291-24874758
REVERSE LENGTH=1299
Length=1299
Score = 562 bits (304), Expect = 2e-159
Identities = 513/613 (84%), Gaps = 17/613 (3%)
Strand=Plus/Plus
Query 1 GAGAGAAAAGAAAGAGAGA-ATAATGTCTCCTACTCCAGAATGGGTCATGGTTGGAGGAG 59
|||| |||||| ||||||| || ||| || |||||||||| ||| ||||| |||||||||
Sbjct 46 GAGAAAAAAGAGAGAGAGATATCATGACTACTACTCCAGATTGGATCATGATTGGAGGAG 105
Query 60 AAGGTCCTGAGAGTTACAAGCAGCATTCTTCGTATCAAAGAG-ATTTGCTGAAAGCAG-C 117
| |||||||||||||| || || || || |||||||| |||| | ||| || |||| | |
Sbjct 106 ACGGTCCTGAGAGTTATAACCAACAATCCTCGTATCAGAGAGCA-TTGTTGGAAGC-GAC 163
Query 118 AAAGGATAAAATAAACGCGGTGATCTCAGCAAACCTCAG-CCTCGATTTGATTTCGAATC 176
|||||| || || | | || ||||||||| || ||| | ||| || |||||||||||||
Sbjct 164 AAAGGACAAGATGACCAAGGCGATCTCAGCCAATCTC-GACCTAGACTTGATTTCGAATC 222
Query 177 GGTTTAGTGTTGCGGATTTCGGTTGTGCGAGTGGACCTAACACTTTTGTGGCAGTCCAAA 236
| || | ||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 223 GCTTCATTGTAGCGGATTTCGGTTGTGCAAGTGGACCTAACACTTTTGTGGCAGTTCAAA 282
Query 237 ACATAATAGATGCCGTGGAAGAGAAGTATCTTAGAGAAACCGGACAAAACCCGTCAGATA 296
||||||||||||| || ||||| ||||| | |||||||||||||||||||||| ||||||
Sbjct 283 ACATAATAGATGCGGTAGAAGAAAAGTACCGTAGAGAAACCGGACAAAACCCGGCAGATA 342
Query 297 ACATCGAGTTCCAAGTCCTCTTCAACGACTTAAGCAAT-AACGATTTCAACACTCTCTTC 355
||||||||||||||||||||||||| || || ||| | || ||||||||||||||||||
Sbjct 343 ACATCGAGTTCCAAGTCCTCTTCAATGATTTCAGCC-TCAATGATTTCAACACTCTCTTC 401
Query 356 C-GAGCACTTCCTTC-GGACAGGAGATACTACAGTGCTGGCGTTCCCGATTCCTTCTTCG 413
| || ||||||| | ||| || ||||||| ||| ||||| ||||| | |||||||||||
Sbjct 402 CAGA-CACTTCCACCCGGA-AGAAGATACTTCAGCGCTGGAGTTCCTGGTTCCTTCTTCG 459
Query 414 ACCGTGTTCTTCCTAAACAGAGTATCCACATAGGAGTCATGAATTACGCTTTTCAGTTCA 473
| |||||||||||||| ||||| ||||||| |||||||||| |||||| || || ||||
Sbjct 460 AACGTGTTCTTCCTAAGGAGAGTTTCCACATCGGAGTCATGAGTTACGCGTTCCATTTCA 519
Query 474 CCTCCAAAATCCCCAAAGGGATCTCCG-ACCGCAACTCTCCCCTGTGGAACAGAGACATA 532
|||||||||||||||||||||| | | ||||| |||||||| ||||||||| ||||||
Sbjct 520 CCTCCAAAATCCCCAAAGGGAT-TATGGACCGCGACTCTCCCTTGTGGAACAAAGACATG 578
Query 533 CATTGCACTGGCTTCAACAACAAGGTCAAGAAGGCATATTTTGATCAGTACTCGCTCGAC 592
|| ||||| || |||||| | |||||||| || ||| |||| |||||||| |||||
Sbjct 579 CAGTGCACGGGGTTCAACCCCGCTGTCAAGAAAGCGTATCTTGACCAGTACTCTATCGAC 638
Query 593 TCCAAGAATATCT 605
|||| ||| |||
Sbjct 639 ACCAA-AAT-TCT 649
> AT1G66690.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:24869554-24870850
REVERSE LENGTH=1114
Length=1114
Score = 560 bits (303), Expect = 6e-159
Identities = 497/591 (84%), Gaps = 11/591 (2%)
Strand=Plus/Plus
Query 1 GAGAGAAAAGAAAGAGAGA-ATAATGTCTCCTACTCCAGAATGGGTCATGGTTGGAGGAG 59
|||| |||| | ||||| | |||||| || |||||| ||| ||| ||||| |||| |||
Sbjct 30 GAGATAAAACAGAGAGATATATAATGACTACTACTCAAGATTGGATCATGATTGGTGGAT 89
Query 60 AAGGTCCTGAGAGTTACAAGCAGCATTCTTCGTATCAAAGAGATTTGCTGAAAGCAGCAA 119
| || ||||| |||||||| || || || |||||||| |||| |||| || |||| ||||
Sbjct 90 ATGGCCCTGAAAGTTACAACCAACAGTCATCGTATCAGAGAGCTTTGTTGGAAGCGGCAA 149
Query 120 AGGATAAAATAAACGCGGTGATCTCAGCAAACCTCAG-CCTCGATTTGATTTCGAATCGG 178
|||| || || | || || |||||| || |||||| | ||| || ||||||||||||||
Sbjct 150 AGGACAAGATGACCGAGGCGATCTCCGCCAACCTC-GACCTAGACTTGATTTCGAATCGC 208
Query 179 TTTAGTGTTGCGGATTTCGGTTGTGCGAGTGGACCTAACACTTTTGTGGCAGTCCAAAAC 238
|| | ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 209 TTCATTGTAGCGGATTTCGGTTGTGCAAGTGGACCTAACACTTTTGTGGCAGTCCAAAAC 268
Query 239 ATAATAGATGCCGTGGAAGAGAAGTATCTTAGAGAAACCGGACAAAACCCGTCAG-ATAA 297
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 269 ATAATAGATGCCGTGGAAGAGAAGTATCTTAGAGAAACCGGACAAAACCCGG-AGGATAA 327
Query 298 CATCGAGTTCCAAGTCCTCTTCAACGACTTAAGCAAT-AACGATTTCAACACTCTCTTCC 356
||||||||||||||||||||||||||||||||| ||| || || ||||||||||||||||
Sbjct 328 CATCGAGTTCCAAGTCCTCTTCAACGACTTAAG-AATCAATGACTTCAACACTCTCTTCC 386
Query 357 -GAGCACTTCCTTCGGACAGGAGATACTACAGTGCTGGCGTTCCCGATTCCTTCTTCGAC 415
|| |||| ||| ||| || ||||||| || || || ||||| | |||||||||| ||
Sbjct 387 AGA-CACTCCCTCCGGGGAGAAGATACTTTAGCGCCGGGGTTCCTGGTTCCTTCTTCAAC 445
Query 416 CGTGTTCTTCCTAAACAGAGTATCCACATAGGAGTCATGAATTACGCTTTTCAGTTCACC 475
|||||||||||||| |||||| ||||||| | |||||||| |||||| || | ||||||
Sbjct 446 CGTGTTCTTCCTAAGCAGAGTTTCCACATCGCAGTCATGAGTTACGCATTCCTTTTCACC 505
Query 476 TCCAAAATCCCCAAAGGGATC-TCCGACCGCAACTCTCCCCTGTGGAACAGAGACATACA 534
||||||||||||||||||||| | |||||| ||||||| ||||||||| |||||| ||
Sbjct 506 TCCAAAATCCCCAAAGGGATCATG-GACCGCGACTCTCCGTTGTGGAACAAAGACATGCA 564
Query 535 TTGCACTGGCTTCAACAACAAGGTCAAGAAGGCATATTTTGATCAGTACTC 585
||||| || |||||| | || ||||| || ||| |||| ||||||||
Sbjct 565 GTGCACCGGGTTCAACCCCGCTGTGAAGAAAGCCTATCTTGAGCAGTACTC 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36821629751
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5