BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925867

Length=281
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24630.1 | Symbols:  | unknown protein; Has 5348 Blast hits ...   185    2e-46
  AT3G25070.1 | Symbols: RIN4 | RPM1 interacting protein 4 | chr3...  87.9    4e-17


> AT3G24630.1 | Symbols:  | unknown protein; Has 5348 Blast hits 
to 3182 proteins in 353 species: Archae - 0; Bacteria - 481; 
Metazoa - 1959; Fungi - 405; Plants - 180; Viruses - 10; 
Other Eukaryotes - 2313 (source: NCBI BLink). | chr3:8988055-8990873 
FORWARD LENGTH=2489
Length=2489

 Score =  185 bits (100),  Expect = 2e-46
 Identities = 114/120 (95%), Gaps = 3/120 (3%)
 Strand=Plus/Plus

Query  15   AAACACAATGCCTGAAGGGAAATTGAA-ATCAGGAGTTTATAGATCATTTATAATGTGTG  73
            ||| |||||||||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct  173  AAA-ACAATGCCTGAAGGGAAATT-AAGATCAGGAGTTTATAGATCATTCATAATGTGTG  230

Query  74   ATGATCCAAGAGATGTTGTGGATTGTGGAGCTATTAAGAAACAGAGTAAGAGCCGTAGTA  133
            ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct  231  ATGATCCAAGAGATGTTGTTGAATGTGGAGCTATTAAGAAACAGAGTAAGAGCCGTAGTA  290


> AT3G25070.1 | Symbols: RIN4 | RPM1 interacting protein 4 | chr3:9132310-9134030 
FORWARD LENGTH=1067
Length=1067

 Score = 87.9 bits (47),  Expect = 4e-17
 Identities = 91/109 (83%), Gaps = 15/109 (14%)
 Strand=Plus/Plus

Query  187  CAATCACAAGCTCCT-C-C-TCCT-C--CTTCCAGAACCAAACCTGAGCAAGTTGATC-C  239
            ||||||||||||||| | | |||| |  |||||||||||||||||||||||||||| | |
Sbjct  296  CAATCACAAGCTCCTCCTCATCCTCCTTCTTCCAGAACCAAACCTGAGCAAGTTGA-CAC  354

Query  240  G-TC-GC-G-T---GTGAGCTTATGAGAAGCCGAGAAGAGAGCGAGTTG  281
            | |  |  | |   |||||| ||||||||||||||||||||||||||||
Sbjct  355  GGTTAGAAGATCACGTGAGCATATGAGAAGCCGAGAAGAGAGCGAGTTG  403



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12918811493


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5