BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925873

Length=640
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25610.1 | Symbols: RD22, ATRD22 | BURP domain-containing pr...   414    4e-115


> AT5G25610.1 | Symbols: RD22, ATRD22 | BURP domain-containing 
protein | chr5:8914233-8916800 REVERSE LENGTH=1560
Length=1560

 Score =  414 bits (224),  Expect = 4e-115
 Identities = 268/289 (93%), Gaps = 3/289 (1%)
 Strand=Plus/Plus

Query  335   GCGGC-GGGGTCAAGAAGTTGTCGGACGACAAGTCGGTGGTGTGTCACAAACAGAAGTAT  393
             ||||| ||||| ||||||||||| ||||| || || ||||||||||||||||||||||| 
Sbjct  1011  GCGGCTGGGGTAAAGAAGTTGTCTGACGATAAATCTGTGGTGTGTCACAAACAGAAGTAC  1070

Query  394   CCGTTCGCGGTGTTCTACTGCCATAAGGCTATGATGACCAGCGTTTACGCGGTTCCACTA  453
             || |||||||||||||||||||| ||||| |||||||| | ||| ||||||||||| || 
Sbjct  1071  CCATTCGCGGTGTTCTACTGCCACAAGGCGATGATGACGACCGTCTACGCGGTTCCGCTC  1130

Query  454   GAAGGAGAGAACGGGATGCGAGCTAAAGCAGTTGCGGTGTGCCACAAGAACACCTCAGCT  513
             || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1131  GAGGGAGAGAACGGGATGCGAGCTAAAGCAGTTGCGGTATGCCACAAGAACACCTCAGCT  1190

Query  514   TGGAACCCAAACCACTTGGCCTTCAAAGTCCTTAA-GGTGAAGCCAGGGACCGTTCCGGT  572
             |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct  1191  TGGAACCCAAACCACTTGGCCTTCAAAGTC-TTAAAGGTGAAGCCAGGGACCGTTCCGGT  1249

Query  573   CTGCCACTTCCTCCCGGAGACCCATGTTGTGTGGTTCACCTACTAGATA  621
             ||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct  1250  CTGCCACTTCCTCCCGGAGACTCATGTTGTGTGGTTCAGCTACTAGATA  1298


 Score =  108 bits (58),  Expect = 8e-23
 Identities = 92/108 (85%), Gaps = 4/108 (4%)
 Strand=Plus/Plus

Query  233  AGACTCAGCTCCACGATGATCCTAACGCGGCTCTCTTCTTCTTGGAGAAGGA-TATGTTT  291
            |||||||||||||||| ||||||||||||||||||||||||||||||||||| | || ||
Sbjct  607  AGACTCAGCTCCACGACGATCCTAACGCGGCTCTCTTCTTCTTGGAGAAGGACT-TGGTT  665

Query  292  C-CTGGAAAAGCTATGAACCTTCGGTTTAATGCAGAGGACGGTTGCGG  338
            | | ||||| |  |||||  | |||||||| || ||||| |||| |||
Sbjct  666  CGCGGGAAA-GAAATGAATGTCCGGTTTAACGCTGAGGATGGTTACGG  712


 Score = 97.1 bits (52),  Expect = 2e-19
 Identities = 60/64 (94%), Gaps = 0/64 (0%)
 Strand=Plus/Plus

Query  1    TTTCTATTCTAACTCCCAAAAATGGCGATTCGTCTTCCTTTGATCTGTCTTCTTGTTTCA  60
            ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct  96   TTTCTATTCCAACTCCCAAAAATGGCGATTCGTCTTCCTCTGATCTGTCTTCTTGGTTCA  155

Query  61   GTCA  64
             |||
Sbjct  156  TTCA  159



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30894000405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5