BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925874
Length=218
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03860.1 | Symbols: ATAPRL5, APRL5 | APR-like 5 | chr3:99212... 278 2e-74
> AT3G03860.1 | Symbols: ATAPRL5, APRL5 | APR-like 5 | chr3:992128-994580
FORWARD LENGTH=1505
Length=1505
Score = 278 bits (150), Expect = 2e-74
Identities = 191/208 (92%), Gaps = 14/208 (7%)
Strand=Plus/Minus
Query 1 TCAAATTATTCAGTAAAAGAAATGAGGCC-AAAACAG--A-CTCAAATTTATAGAACAAA 56
||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||
Sbjct 1476 TCAAATTATTCAGTAAAAGAAATGAGGCCAAAAACAGACATCTCAAATTTATAGAACAAA 1417
Query 57 AAAGAGAGAAAGATATTCACAAACAGAAGCAAAGCTGTTCCTGGATTTACATGCTTCGTT 116
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 AAAGGGAGAAAGATATTCACAAACAGAAGCAAAGCTGTTCCTGGATTTACATGCTTCGTT 1357
Query 117 GCAGACAAATCAAACTCAAAAAAGTCATATAACAGGGGTTTCATTAAAGGAAGGAACTCT 176
|||||||||||||||||||| ||||||||||||| || ||||||||||| ||||
Sbjct 1356 GCAGACAAATCAAACTCAAATAAGTCATATAACA----TT-CATTAAAGGAA----CTCT 1306
Query 177 CAGATTTCCAGAACACACTTAAAAAGCT 204
||||||||||| |||||||||||| |||
Sbjct 1305 CAGATTTCCAGCACACACTTAAAA-GCT 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9751943306
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5