BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925876
Length=1657
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24740.1 | Symbols: | Protein of unknown function (DUF1162)... 444 1e-123
AT5G24750.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 196 4e-49
AT5G48830.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 150 4e-35
> AT5G24740.1 | Symbols: | Protein of unknown function (DUF1162)
| chr5:8469951-8489703 REVERSE LENGTH=10517
Length=10517
Score = 444 bits (240), Expect = 1e-123
Identities = 354/408 (87%), Gaps = 12/408 (3%)
Strand=Plus/Plus
Query 901 AGGTGGAAGCTACTCTGTCTGTGATCAATGTGCATTTCTCTCCGTCGATATTTGAAGGAA 960
|||| |||||||||||| || || ||||||| |||||||||||||| |||||| |||||
Sbjct 2276 AGGTTGAAGCTACTCTGCCTATGTTCAATGTCCATTTCTCTCCGTCAATATTTAAAGGAG 2335
Query 961 TCATGTCTGTGATTGAATGTCTTGATACTCAGGATCATGGAGA-TCGAAATGCTCCA-AT 1018
|||||||||||||||||| |||||||| ||||||||||||| | ||||||| ||||| |
Sbjct 2336 TCATGTCTGTGATTGAATATCTTGATATTCAGGATCATGGA-ACTCGAAATCCTCCACCT 2394
Query 1019 TGACCCC-GTTCCCATCTTTCGTTTCACCGTCGATACCAACTTGGTACTTTTCAGGTTGC 1077
| |||| | ||||||||||| |||||| || | ||| |||||| | |||| |||||||
Sbjct 2395 T--CCCCTGCTCCCATCTTTCACTTCACCATCAAAACCGACTTGGCATTTTTAAGGTTGC 2452
Query 1078 ACGTCAACCTTGAAAATGAAGGAGAAAATAGCACAGTGCTTGTTCTTTCTATTCAACAGC 1137
||||||| || |||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 2453 ACGTCAATCTCGAAAATAAAGGAGAAAATAGCACAGTGCTTGTTCTTTCTATACAGCAGC 2512
Query 1138 TGGATCTCTGGTATTCACTTACCAAAGTTGAAGAGTGGTCGGTCCGTGTGAAAACATTGG 1197
| |||||||||||||||| | | | | ||||||||||||| ||||||| |||||||||||
Sbjct 2513 TTGATCTCTGGTATTCACGTGCTATATTTGAAGAGTGGTCAGTCCGTGCGAAAACATTGG 2572
Query 1198 AAATAAAAGCTTGCTCCTCTAAAGATGCAG---ACGGTCATATTTTGTGTTCATCTGGGA 1254
|||||| ||||||||||||||||||||||| || |||||||||| ||||||||||| |
Sbjct 2573 AAATAACAGCTTGCTCCTCTAAAGATGCAGCTGACAGTCATATTTTATGTTCATCTGGAA 2632
Query 1255 ATCTACTGAAATCGTACTCTGCCTATGGACAGGGGATGGATGCTCATA 1302
||||||| ||||||| || | || ||||||| ||||||||||||||||
Sbjct 2633 ATCTACTCAAATCGT-CT-TCCC-ATGGACATGGGATGGATGCTCATA 2677
Score = 278 bits (150), Expect = 2e-73
Identities = 178/191 (93%), Gaps = 3/191 (2%)
Strand=Plus/Plus
Query 1325 AGGAAACATGAGTACAAAAGTCCAGATAAGAGATGTGTCTCTTCTTATATCAGATGGAAG 1384
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5238 AGGAAACATGAGCATAAAAGTCCAGATAAGAGATGTGTCTCTTCTTATATCAGATGGAAA 5297
Query 1385 GTGGGGATGTAGCGGTCTGCTTCTTGAAGTTCTTATGAGAAACTTTCTGCTGCAAGCTAA 1444
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 5298 GTGGGGATGTAGCGGTATGCTTCTTGAAGTTCTTATGAGAAACTTTCTCCTGCAAGCTAA 5357
Query 1445 TCTGACCGCGAAGAAGGA-GGAGAGTTTGGTTTCATGTGATCTTGAAGTGAATTATAA-A 1502
|||| ||| || || | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 5358 TCTGGCCGAAAAAAAT-ATGGAGAGTTTGGTTTCATGTGATCTTGAAGTGAATTATAATA 5416
Query 1503 ATATGCACAAG 1513
|||||||||||
Sbjct 5417 ATATGCACAAG 5427
Score = 147 bits (79), Expect = 5e-34
Identities = 122/142 (86%), Gaps = 5/142 (4%)
Strand=Plus/Plus
Query 762 TGGATTTCAGATGTGGTTGAGAAAAGAGAGTTTGCTGGTAAGAAGGCTAAGCTTGCTGCT 821
|||| ||||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||
Sbjct 298 TGGAGTTCAGATGTCGTTGAGAAAAGAGAGTTTGCTGGTAAGAAAGCTAAACTTGCTTCT 357
Query 822 GCAGAATTGGCAAAATTATCCAGGCGTATCTTTGATAGTCCAG-CAGGGAATCCTTTTAG 880
|||||| |||||||||| ||||||||| |||| || | ||||| | || ||| ||| |
Sbjct 358 GCAGAACTGGCAAAATTGTCCAGGCGTGTCTTCGACAATCCAGGC-GGAAATTCTT--A- 413
Query 881 TATGTCATATATTGCAGCCAAG 902
||||||||||||| | ||||||
Sbjct 414 TATGTCATATATTACTGCCAAG 435
> AT5G24750.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr5:8490572-8494587 REVERSE LENGTH=1863
Length=1863
Score = 196 bits (106), Expect = 4e-49
Identities = 126/135 (93%), Gaps = 3/135 (2%)
Strand=Plus/Plus
Query 630 ATCATATGCCCATTTATGCTGGATCAGTTCTATTGGGCAGAAAAGATGTCTTGGCTTGGT 689
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 ATCATATGCCCATTTATGCTGGATCAGTTCTATTGGGCAGAAAAGATGTCTTGGCTTGGA 1374
Query 690 GTTGCTCCTCAACCATTGAAAAGATACCACCTGCTTCTGGAGGAAACAAATGATGAGAA- 748
|||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||
Sbjct 1375 GTTGCTCCTCAACCATTGAAAAGAAACCACCTGCTTCTAGAGGACTCAAATGATGAGAAG 1434
Query 749 --CATCATGGAAGCT 761
||||| |||||||
Sbjct 1435 AACATCACGGAAGCT 1449
> AT5G48830.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages. | chr5:19800169-19803098
REVERSE LENGTH=1874
Length=1874
Score = 150 bits (81), Expect = 4e-35
Identities = 93/99 (94%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 1514 AGCTCTATACCAGTGGTTGCATCAGAATATGGAAGCAGTTGTGTTGATGTATGATGATCG 1573
||||||||| |||||||||||||||||| ||||||||||||| | ||||||||| |||||
Sbjct 1351 AGCTCTATATCAGTGGTTGCATCAGAATCTGGAAGCAGTTGTATCGATGTATGAAGATCG 1410
Query 1574 CTTTGACCTCTACATTCTTCAAACTCAGGTTATCAACAA 1612
|||||||||||||||||||||||| ||||||||||||||
Sbjct 1411 CTTTGACCTCTACATTCTTCAAACCCAGGTTATCAACAA 1449
Score = 89.8 bits (48), Expect = 8e-17
Identities = 52/54 (96%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 359 CAAAATAAGAAAATCAGGCAAGGAGGATCGGTTTGCAGAATTCTTATATTTCCA 412
||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1072 CAAAATAAGAAAATCAGGCAAGGAGGATCTGTTTGCAGAATTTTTATATTTCCA 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81877088895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5