BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925882 Length=859 Score E Sequences producing significant alignments: (Bits) Value AT3G17710.1 | Symbols: | F-box and associated interaction doma... 743 0.0 AT2G17310.1 | Symbols: SON1 | F-box and associated interaction ... 215 6e-55 AT3G51171.1 | Symbols: | F-box and associated interaction doma... 200 2e-50 AT3G16555.1 | Symbols: | F-box family protein | chr3:5633426-5... 193 3e-48 > AT3G17710.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:6055548-6056778 FORWARD LENGTH=1231 Length=1231 Score = 743 bits (402), Expect = 0.0 Identities = 694/829 (84%), Gaps = 44/829 (5%) Strand=Plus/Plus Query 35 TACCACCATCACCGCTTGCGATGGGTTATTGTTTCGTGACTTTTGGAAGCAAGGTGTTGC 94 ||| || |||| |||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 325 TACAACTATCATGGCTTGCGATGGGTTATTGTTTCGTGATTTTTGGAAACAAGGTGTTGC 384 Query 95 GGTTTGGAATCCGTGGTTGAGACAGGTTGGATGGATCGAGTACGAGGATAAAGGTTTTCA 154 |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | Sbjct 385 GGTTTGGAATCCGTGGTTGAGACAGGTTGGGTGGATCGAGTATGAGGATAAAGGTTTCCG 444 Query 155 TTTTTGCGGTGTAGGATACGATAGTTGTAAACCCGAAAAGAGTTACAAGATCTTGGGGTA 214 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 445 TTTTTGCGGTGTAGGATACGATAGTTGTAAACCCGATAAGTGTTACAAGATCTTGGGGTA 504 Query 215 TTTTAATTGT-CTCCGTAAAGTCAGCGACACT-TACCATGTAAG-TTACCGC-AGAGTTG 270 |||||||||| | | ||| | |||||||| || | ||| | ||| |||| | | || || Sbjct 505 TTTTAATTGTACGC-GTAGACTCAGCGACTCTCT-CCAGG-AAGGTTACTACCA-AGCTG 560 Query 271 CGATTTACGAGTGTTCGTCTCATGCGTTGAAGTTCATTGATGCCCCT-----TT-CA-CG 323 |||| ||||||||| | || || ||||| || || |||||| ||||| || || | Sbjct 561 CGATCTACGAGTGTGCATCGCAGGCGTTCAAATTTATTGATACCCCTAACCCTTTCAAC- 619 Query 324 CAGTGGCCCATCATGGCA-CCTTTGTCCTTGAACGGGAATCTCTATTGGCTTACTCATGA 382 | |||||||| || || | ||||||||| ||||||||||||| ||||||||| ||||| | Sbjct 620 CTGTGGCCCAACAAGG-ATCCTTTGTCCGTGAACGGGAATCTTTATTGGCTTGCTCATAA 678 Query 383 --ACC-TGAGACT-TATAAGTATTTCATCCGAAGC-TTTGATTTCTCCAAGGAGATATTC 437 ||| ||||||| | | ||||||||||| ||| | ||||||||||||| |||||| ||| Sbjct 679 CCACCCTGAGACTCT-TGAGTATTTCATC-GAAACCTTTGATTTCTCCATGGAGATTTTC 736 Query 438 AAACCTTTTTGTCTCCTGCCCTGTCTAAAGAACCGTTCTCG-AG-A-TGAACTTGTCCTC 494 ||||| |||||||| ||||| |||| ||| || || | | || | |||||||||||| Sbjct 737 AAACCCTTTTGTCTACTGCCGTGTCGGAAGGAC--TT-TGGTAGCAATGAACTTGTCCTG 793 Query 495 GCGGTTTTTAAAAGA-GATCGGTTTTCGTTGTTAAAGCAATG-TAATGTAACAGGGAAGA 552 ||||||||||| || ||||||||||| |||||||||||||| | | |||| ||||| Sbjct 794 GCGGTTTTTAAG-GAAGATCGGTTTTCATTGTTAAAGCAATGCTTC-GAAACAACGAAGA 851 Query 553 TTGATATTTGGGTAACGAAGAAGAAGATTGAT-G-GAG-AGGAAGTAGTGTGGATAAACT 609 |||| ||||||||||| |||| |||||||||| | ||| ||||||| ||||||||||| | Sbjct 852 TTGAGATTTGGGTAACAAAGATGAAGATTGATAGAGAGGAGGAAGTGGTGTGGATAAAGT 911 Query 610 TGATGACTTTGCCAACAACTAACTTGTCTAAGT-TGGTTAATAAGTT-TTGTGGCATTAG 667 | ||||| ||||| ||||| |||||| |||| | | | | ||| || |||| ||| ||| Sbjct 912 TTATGACATTGCCGACAACCAACTTGCCTAA-TCTAGATGATAC-TTATTGTTGCAGTAG 969 Query 668 TTACTTCATCTATGACAAGACCCTAATCATGTGTTGTGGCGACCACCAAACTGGAGCCGC 727 ||||||||||| |||||||||| ||||||||||||||||||| || |||||||||| | Sbjct 970 TTACTTCATCTTTGACAAGACCATAATCATGTGTTGTGGCGATTACAAAACTGGAGCTAC 1029 Query 728 TTGCATCTATTTTGTGAAGGGAGATATATTCAAGAAGATTCAAAT-AGATTCCGGTAGTG 786 |||||||||| | |||| ||||||||| |||||||||||||| || | |||| || | | Sbjct 1030 TTGCATCTATATGGTGAGGGGAGATATGTTCAAGAAGATTCAGATCA-ATTCTGGGATTT 1088 Query 787 TTCGGTTTTCTCACTGTGTCTATCTTCCAAATTTGTTATCGGTTCCTTT 835 ||| ||||||| ||||||||||||||||||||||| | ||||||||||| Sbjct 1089 TTCAGTTTTCTTACTGTGTCTATCTTCCAAATTTGATCTCGGTTCCTTT 1137 > AT2G17310.1 | Symbols: SON1 | F-box and associated interaction domains-containing protein | chr2:7531194-7532412 FORWARD LENGTH=1219 Length=1219 Score = 215 bits (116), Expect = 6e-55 Identities = 585/795 (74%), Gaps = 97/795 (12%) Strand=Plus/Plus Query 99 TGGAATCCGTGGTTGAGACAGGTTGGATGGATCGAGTACGAGGATAAAG-GTTTTCAT-T 156 |||||||| ||||||||||||||| ||||||||||||||| | || ||| ||| | | | Sbjct 367 TGGAATCCATGGTTGAGACAGGTTAGATGGATCGAGTACGCGAATCAAGAGTTCT-GTGT 425 Query 157 TTTGCGG-TGTAGGATACGATAGTTGTAAACCCGAAAAGAG-TTACAAGATCTTGGGGTA 214 ||| ||| | |||| ||||||| | ||| |||||||||| | ||||||||||||||| | Sbjct 426 TTT-CGGCT-TAGGGTACGATAATAGTAGACCCGAAAAG-GTTTACAAGATCTTGGGCCA 482 Query 215 TTT-TAATTGTCTCCGTAAAGTCAGCGACACTTACCATGTAAGTTACCGCAGAGTTGCGA 273 ||| | ||||| | ||||||| ||| | | || | | | | ||||| || Sbjct 483 TTTGT-TTTGTCACGGTAAAGT--------CTT--GA-G--AGAT-CAG-AAAGTTGTGA 526 Query 274 TTTACGAGTGTTCGTCTCA-TGCGTTGAAGTTCATTGAT-GCCCCT----TTCACGCAGT 327 | ||||||||| ||||| | | |||||| ||| |||||| | ||| | ||| | | Sbjct 527 TCTACGAGTGTGCGTCTGACT-CGTTGAGGTTTATTGATAG-ACCTGAGGATGACG-ACT 583 Query 328 GGCCCATCA-TG-----GC---AC---C---TTTGTCCTTGAACGGGAATCTCTATTGGC 372 ||||||| | || || || | | |||| || || || |||||||||||| Sbjct 584 GGCCCATAACTGAAACAGCTAAACGATCAAATGTGTCATTAAATGGAAATCTCTATTGGT 643 Query 373 TTACTCAT-G-AA-CCTGAGACTTATAAGTATTTCATCCGAAGCTTTGATTTCTCCAAGG 429 || | | | || ||||| | || |||| | |||||||| |||||||||||| | || Sbjct 644 TTGGTTGTAGTAATTATGAGAATGATGAGTACTACATCCGAATCTTTGATTTCTCGACGG 703 Query 430 A-GATATTCAAACCTTTTTGTCTCCTGCCCTGTCTAAA-GAACCGTTCT-CGAGATGAAC 486 | ||| |||||||||||||||||||| || |||| ||| || || | | | ||||||| Sbjct 704 AGGAT-TTCAAACCTTTTTGTCTCCTTCCGTGTC-AAATGAGCCATAGTAC-TGATGAAC 760 Query 487 TTGTCCTCGCGGTTTTTAAAAGAGATCGGTTTTCGTTGTTAAAGCAATGTAATGTAACA- 545 ||||||||||||||| ||| |||||||||||||||||||||||||||| | ||||||| Sbjct 761 TTGTCCTCGCGGTTTATAAGGGAGATCGGTTTTCGTTGTTAAAGCAATGCAGTGTAACAA 820 Query 546 GGGAAGATTGATATTTGGGTAACGAA-GA-AG-A--AG-ATTGA---TGG-A--GA-GGA 592 |||| ||||| | ||||||||||| || || | || | ||| ||| | | ||| Sbjct 821 GGGA-GATTGGGGTATGGGTAACGAAAGAGAGGATTAGTAATGACAATGGGAACGGTGGA 879 Query 593 -AGTA-GTG---TGGATAAACTTGATGACTTTGCCAACAAC-TAACTTGTCTAAGTTGGT 646 || ||| ||| |||| |||||||| ||| ||| ||| ||||||| | ||||| | Sbjct 880 GAGGGCGTGGAGTGGTTAAAGTTGATGACCTTGTCAA-AACCTAACTTGCCAAAGTTA-T 937 Query 647 TAATAAGTTTTGTGGCATTAGTTACTTCATCTATGACAAGACCCTA-ATCATGTGTTGTG 705 | | || | | |||||||||||||||||| |||||| || | ||||||| || Sbjct 938 T--TG-GTAC-G-G---TTAGTTACTTCATCTATGGGAAGACCTTATA-CATGTGTAATG 988 Query 706 GCGACCACCAAACTGGAGCCGCTTGCATCTATTTTGTGAAGGGA-GATATATTCAAGAAG 764 ||||| | |||||| | |||||||||||| |||||| |||| ||| | | ||||||| Sbjct 989 GCGACGATGAAACTGCATTGGCTTGCATCTATATTGTGA-GGGAAGATGTGTGCAAGAAG 1047 Query 765 ATTCAAATAGATTCCGGTAGTGTTCGGTTTTC-TCACTGTGTCTAT-CTTCCAAATTTGT 822 ||||||||| ||| || | | || | | | ||||||||| ||| | |||| |||| Sbjct 1048 TTTCAAATAGGTTCTGGAAATATTAACTGT-CGTCACTGTGTTTATACACCCAA-TTTGC 1105 Query 823 TATCGGTTCCTTTAT 837 | ||| ||||||||| Sbjct 1106 TCTCGCTTCCTTTAT 1120 > AT3G51171.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:19010805-19012008 FORWARD LENGTH=1204 Length=1204 Score = 200 bits (108), Expect = 2e-50 Identities = 571/782 (73%), Gaps = 81/782 (10%) Strand=Plus/Plus Query 39 ACCATCACCGCTTGCGATGGGTTATTGTTTCGTGACT-TTTGG-AAG--C-AAGGTG-TT 92 |||||||| |||||||||||||| |||||| || ||| || || || | |||| | Sbjct 337 ACCATCACTGCTTGCGATGGGTTCTTGTTTTGTAACTCTTGGGCTAGTCCTAAGGGGACA 396 Query 93 GCGGTTTGGAATCCGTGGTTGAGACAGGTTGGATGGATCGAGTACGAGGATAAAGGTTTT 152 || |||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| Sbjct 397 GCTTTTTGGAATCCGTGGTTGAAACAGGTTAAATGGATCGAGTACGAGGATAAAGG-TTT 455 Query 153 C-ATTTTTGCGG-TGTAGGATACGATAGTTGTAAACCCGAAAAGAG-TTACAAGATCTTG 209 | || | || || | |||||||||||| | || | || |||| | |||||| |||||| Sbjct 456 CAATGTCTGTGGCT-TAGGATACGATAATACTAGAGACGGAAAG-GTTTACAAAATCTTG 513 Query 210 GGGTATTTTAAT-TGTCTCCGTAAAGTCA-GCGA-CACTTACCATGTA-AGTTACC-GCA 264 ||||| |||||| |||| || | ||| | | || | |||| | ||| | ||| | | Sbjct 514 GGGTA-TTTAATGTGTCGCCCTGAAG--ATGGGAGCTCTTA-C--GTATA-CCACCAG-A 565 Query 265 GAGTTGCGATTTACGAGTGTTCGTCTCATGCGTTGAAGTTCATTGATGCCCCTTTCACGC 324 |||||||||| ||||| ||| | ||||| ||||| ||||| ||||| | || | Sbjct 566 GAGTTGCGATCTACGACTGTGCCTCTCACGCGTTCAAGTTTATTGAAATATCGAACAAGG 625 Query 325 AGTGG--CC-CATC-ATG--GCAC----C--TTTGTCCTTGAACGGGAATCTCTATTGGC 372 | ||| || | | ||| ||| | | |||| |||||||| ||||||||||||| Sbjct 626 ACTGGTTCCTAACCGATGTTACACGATTCAGTGTGTCTTTGAACGGAAATCTCTATTGGC 685 Query 373 TTACTCATGA-ACCTGAGACTTATAAGTATT-TCATCCGAA-GCTTTGATTTCTCCAAGG 429 || ||| | | || | ||| || | | || |||||| || | ||||||||||| | || Sbjct 686 TTTCTCCT-ATTCCCAACACTGATGACT-TTCTCATCC-AATGTTTTGATTTCTCTAGGG 742 Query 430 AGATATTCAAACCTTTTTGTCTCCTGCCCTGTCTAAAGAACCG-TTCTCGAGATGAACTT 488 |||||| |||||| |||||||| || || |||| ||| | | || ||| |||| Sbjct 743 AGATATGCAAACCCTTTTGTCTTCTTCCTTGTCGGAAG-TTTGATGCTTTCGATTTACTT 801 Query 489 GTCCTCGCGGTTTTTAAAAGAGATCGGTTTTCGTTGTTAAAGCAATGTAATGTA-ACAGG 547 | | ||||| | ||||| |||| || ||||||||||||||| || | ||| | Sbjct 802 G---T--AAGTTTTCAGGGGAGATAGGTTATCCTTGTTAAAGCAATGTTAT-AAGACAAG 855 Query 548 GAAGATTGATATTTGGGTAACGAAG---AAGA-AGAT--T-G--------ATGG---AGA 589 |||| |||| |||||||| |||||| |||| ||| | | |||| ||| Sbjct 856 GAAGGTTGAGATTTGGGTTACGAAGAATAAGATTGATACTAGTAACAACAATGGATCAGA 915 Query 590 GGAAGTAGTGTGGATAAACTTGATGACTTTGCCAACAACTAACTTGTCTAAGTTGGTTAA 649 ||||| |||||||| ||||| |||| |||| | ||| ||||||| | || || || | Sbjct 916 CGAAGTTGTGTGGATTCACTTGTTGACGTTGCTACCAAATAACTTGCCAAACTT-ATTTA 974 Query 650 T-AAGTTTTGTGGCATTAGTTACTTCATCTATGACAAGACC-C-TA-ATCATGTGTTGTG 705 | ||| || ||||||||||||||||||||||||||||||| | | ||||| | ||||| Sbjct 975 TCGAGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCTTCATCATTTATTGTG 1034 Query 706 GC-GACCACCAA-ACTGGA-GCCGCTTGCATCTATTTTGTGAAGGGAGATATATTCAAGA 762 | ||| | || ||| | || |||||||||||| |||| | ||||||| | |||||| Sbjct 1035 -CTGACGAG-AACACTT-ATGCGGCTTGCATCTATATTGTCAGGGGAGATTTGCTCAAGA 1091 Query 763 AG 764 || Sbjct 1092 AG 1093 > AT3G16555.1 | Symbols: | F-box family protein | chr3:5633426-5634542 FORWARD LENGTH=1050 Length=1050 Score = 193 bits (104), Expect = 3e-48 Identities = 542/742 (73%), Gaps = 76/742 (10%) Strand=Plus/Plus Query 125 ATGGATCGAGTACGAGGATAAAGGTTTTC-ATTTTTGCGGTGTAGGATACGATAGTTGTA 183 |||||||||||||||| ||||||| |||| || | || || ||||||||||||| | || Sbjct 318 ATGGATCGAGTACGAGAATAAAGG-TTTCAATGTATGTGGCGTAGGATACGATAATACTA 376 Query 184 AACCCGAAAAGAG-TTACAAGATCTTGGGGTATTTTA-ATTGTCTCCGTAAAGTCAGCGA 241 || || ||| | |||||| ||||||| ||| |||| | |||| |||| ||| || | Sbjct 377 GGCCTGAGAAG-GTTTACAAAATCTTGGAGTA-TTTAGAGTGTCGCCGTGAAG--AGAG- 431 Query 242 CACTTACCATGTAAGTTACC-GCAGAGTTGCGATTTACGAGTGTTCGTCTCATGCGTTGA 300 | | | | | | | |||| | ||||||||||| ||||||||| | ||||||||||| | Sbjct 432 CTC-GA--ACGCATGCTACCAG-AGAGTTGCGATCTACGAGTGTGCCTCTCATGCGTTCA 487 Query 301 AGTTCATTGATGCCCCTTTCACGCAGTGGCCCAT---C-ATG-GC-AC----C--TTTGT 348 |||| |||||| | || || | ||| ||| | ||| | || | | ||| Sbjct 488 AGTTTATTGATACTTCTAACAAGGTCTGGTTCATAAGCGATGTTCAACGATACAGTGTGT 547 Query 349 CCTTGAACGGGAATCTCTATTGGCTTACTCATGAACCTGAGACTTATAAGTATTTCATCC 408 ||||||||| ||||||||||||||| || || | | ||||| | | ||||| Sbjct 548 GCTTGAACGGAAATCTCTATTGGCTTTCTTTTG-A--T--GACTT-T-CG-----CATCC 595 Query 409 GAAGCTTTGATTTCTCCAAGGAGATATTCAAACCTTTTTGTCTCCTGCCCTGTCTAAAGA 468 | ||||||||||||| | ||||||| ||||||| ||||||||||| || |||| ||| Sbjct 596 TATGCTTTGATTTCTCGAGGGAGATAGTCAAACCCTTTTGTCTCCTTCCGTGTCGGAAG- 654 Query 469 ACCG-T-TCTCGAGATGAACTTGTCCTCGC-GGTTTTTAAAAGAGATCGGTTTTCGTTGT 525 | | | | ||| ||||| |||| | ||||| || ||||| |||| || |||| Sbjct 655 TTTGATAAAT-GCGATTTACTTGCCCTC-CAAGTTTTCAAGGGAGATAGGTTATCCTTGT 712 Query 526 TAAAGCAATGTAATGT-A-ACAGGGAAGATTGATATTTGGGTAACGAAGAAG-A-A--GA 579 |||| |||||| ||| | ||| ||| |||||| |||||||| ||||||||| | | || Sbjct 713 TAAATCAATGT--TGTAAGACAAGGACGATTGAGATTTGGGTTACGAAGAAGAAGATTGA 770 Query 580 -T-T-G--------ATGG---AGAGGAAGTAGTGTGGATAAACTTGATGACTTTGCCAAC 625 | | | |||| ||| ||||| |||||||| | |||| ||||||||||| | Sbjct 771 TTCTAGTAACAACAATGGATCAGACGAAGTTGTGTGGATTAGCTTGTTGACTTTGCCACC 830 Query 626 AACTAACTTGTCTAAGTTGGTTAATAAGTTTTGTGGCATTAGTTACTTCATCTATGACAA 685 || ||||||| | || || ||| | || || ||||||||||||||||||||||||||| Sbjct 831 AAATAACTTGCCAAACTTATTTATTGTGTGTTATGGCATTAGTTACTTCATCTATGACAA 890 Query 686 GACC-C-T-AATCATGTGTTGTGGCGACCACCAA-ACTGGAGCCGCTTGCATCTATTTTG 741 |||| | | |||||| | ||||| ||| | || ||| ||| |||||||||||| | Sbjct 891 GACCACCTTAATCATTTATTGTGAAGACGAG-AACACTTCAGCGGCTTGCATCTATATCA 949 Query 742 TGAAGGGAGATATATTCAAGAAGATTCAAATAGATTCCGGTAG-TGTTCGGTT-TTCTCA 799 | | ||| ||| | ||||||||| || |||| |||||| | | | ||| || || ||| Sbjct 950 TCAGGGGGGATTTGTTCAAGAAGTTTGAAATTGATTCCTCT-GCT-TTCTTTTGTTATCA 1007 Query 800 CTGTGTCTAT-CTTCCAAATTT 820 |||||| ||| || |||| ||| Sbjct 1008 CTGTGTTTATGCTCCCAATTTT 1029 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41895278598 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5