BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925882
Length=859
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17710.1 | Symbols: | F-box and associated interaction doma... 743 0.0
AT2G17310.1 | Symbols: SON1 | F-box and associated interaction ... 215 6e-55
AT3G51171.1 | Symbols: | F-box and associated interaction doma... 200 2e-50
AT3G16555.1 | Symbols: | F-box family protein | chr3:5633426-5... 193 3e-48
> AT3G17710.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6055548-6056778 FORWARD LENGTH=1231
Length=1231
Score = 743 bits (402), Expect = 0.0
Identities = 694/829 (84%), Gaps = 44/829 (5%)
Strand=Plus/Plus
Query 35 TACCACCATCACCGCTTGCGATGGGTTATTGTTTCGTGACTTTTGGAAGCAAGGTGTTGC 94
||| || |||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 325 TACAACTATCATGGCTTGCGATGGGTTATTGTTTCGTGATTTTTGGAAACAAGGTGTTGC 384
Query 95 GGTTTGGAATCCGTGGTTGAGACAGGTTGGATGGATCGAGTACGAGGATAAAGGTTTTCA 154
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 385 GGTTTGGAATCCGTGGTTGAGACAGGTTGGGTGGATCGAGTATGAGGATAAAGGTTTCCG 444
Query 155 TTTTTGCGGTGTAGGATACGATAGTTGTAAACCCGAAAAGAGTTACAAGATCTTGGGGTA 214
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 445 TTTTTGCGGTGTAGGATACGATAGTTGTAAACCCGATAAGTGTTACAAGATCTTGGGGTA 504
Query 215 TTTTAATTGT-CTCCGTAAAGTCAGCGACACT-TACCATGTAAG-TTACCGC-AGAGTTG 270
|||||||||| | | ||| | |||||||| || | ||| | ||| |||| | | || ||
Sbjct 505 TTTTAATTGTACGC-GTAGACTCAGCGACTCTCT-CCAGG-AAGGTTACTACCA-AGCTG 560
Query 271 CGATTTACGAGTGTTCGTCTCATGCGTTGAAGTTCATTGATGCCCCT-----TT-CA-CG 323
|||| ||||||||| | || || ||||| || || |||||| ||||| || || |
Sbjct 561 CGATCTACGAGTGTGCATCGCAGGCGTTCAAATTTATTGATACCCCTAACCCTTTCAAC- 619
Query 324 CAGTGGCCCATCATGGCA-CCTTTGTCCTTGAACGGGAATCTCTATTGGCTTACTCATGA 382
| |||||||| || || | ||||||||| ||||||||||||| ||||||||| ||||| |
Sbjct 620 CTGTGGCCCAACAAGG-ATCCTTTGTCCGTGAACGGGAATCTTTATTGGCTTGCTCATAA 678
Query 383 --ACC-TGAGACT-TATAAGTATTTCATCCGAAGC-TTTGATTTCTCCAAGGAGATATTC 437
||| ||||||| | | ||||||||||| ||| | ||||||||||||| |||||| |||
Sbjct 679 CCACCCTGAGACTCT-TGAGTATTTCATC-GAAACCTTTGATTTCTCCATGGAGATTTTC 736
Query 438 AAACCTTTTTGTCTCCTGCCCTGTCTAAAGAACCGTTCTCG-AG-A-TGAACTTGTCCTC 494
||||| |||||||| ||||| |||| ||| || || | | || | ||||||||||||
Sbjct 737 AAACCCTTTTGTCTACTGCCGTGTCGGAAGGAC--TT-TGGTAGCAATGAACTTGTCCTG 793
Query 495 GCGGTTTTTAAAAGA-GATCGGTTTTCGTTGTTAAAGCAATG-TAATGTAACAGGGAAGA 552
||||||||||| || ||||||||||| |||||||||||||| | | |||| |||||
Sbjct 794 GCGGTTTTTAAG-GAAGATCGGTTTTCATTGTTAAAGCAATGCTTC-GAAACAACGAAGA 851
Query 553 TTGATATTTGGGTAACGAAGAAGAAGATTGAT-G-GAG-AGGAAGTAGTGTGGATAAACT 609
|||| ||||||||||| |||| |||||||||| | ||| ||||||| ||||||||||| |
Sbjct 852 TTGAGATTTGGGTAACAAAGATGAAGATTGATAGAGAGGAGGAAGTGGTGTGGATAAAGT 911
Query 610 TGATGACTTTGCCAACAACTAACTTGTCTAAGT-TGGTTAATAAGTT-TTGTGGCATTAG 667
| ||||| ||||| ||||| |||||| |||| | | | | ||| || |||| ||| |||
Sbjct 912 TTATGACATTGCCGACAACCAACTTGCCTAA-TCTAGATGATAC-TTATTGTTGCAGTAG 969
Query 668 TTACTTCATCTATGACAAGACCCTAATCATGTGTTGTGGCGACCACCAAACTGGAGCCGC 727
||||||||||| |||||||||| ||||||||||||||||||| || |||||||||| |
Sbjct 970 TTACTTCATCTTTGACAAGACCATAATCATGTGTTGTGGCGATTACAAAACTGGAGCTAC 1029
Query 728 TTGCATCTATTTTGTGAAGGGAGATATATTCAAGAAGATTCAAAT-AGATTCCGGTAGTG 786
|||||||||| | |||| ||||||||| |||||||||||||| || | |||| || | |
Sbjct 1030 TTGCATCTATATGGTGAGGGGAGATATGTTCAAGAAGATTCAGATCA-ATTCTGGGATTT 1088
Query 787 TTCGGTTTTCTCACTGTGTCTATCTTCCAAATTTGTTATCGGTTCCTTT 835
||| ||||||| ||||||||||||||||||||||| | |||||||||||
Sbjct 1089 TTCAGTTTTCTTACTGTGTCTATCTTCCAAATTTGATCTCGGTTCCTTT 1137
> AT2G17310.1 | Symbols: SON1 | F-box and associated interaction
domains-containing protein | chr2:7531194-7532412 FORWARD
LENGTH=1219
Length=1219
Score = 215 bits (116), Expect = 6e-55
Identities = 585/795 (74%), Gaps = 97/795 (12%)
Strand=Plus/Plus
Query 99 TGGAATCCGTGGTTGAGACAGGTTGGATGGATCGAGTACGAGGATAAAG-GTTTTCAT-T 156
|||||||| ||||||||||||||| ||||||||||||||| | || ||| ||| | | |
Sbjct 367 TGGAATCCATGGTTGAGACAGGTTAGATGGATCGAGTACGCGAATCAAGAGTTCT-GTGT 425
Query 157 TTTGCGG-TGTAGGATACGATAGTTGTAAACCCGAAAAGAG-TTACAAGATCTTGGGGTA 214
||| ||| | |||| ||||||| | ||| |||||||||| | ||||||||||||||| |
Sbjct 426 TTT-CGGCT-TAGGGTACGATAATAGTAGACCCGAAAAG-GTTTACAAGATCTTGGGCCA 482
Query 215 TTT-TAATTGTCTCCGTAAAGTCAGCGACACTTACCATGTAAGTTACCGCAGAGTTGCGA 273
||| | ||||| | ||||||| ||| | | || | | | | ||||| ||
Sbjct 483 TTTGT-TTTGTCACGGTAAAGT--------CTT--GA-G--AGAT-CAG-AAAGTTGTGA 526
Query 274 TTTACGAGTGTTCGTCTCA-TGCGTTGAAGTTCATTGAT-GCCCCT----TTCACGCAGT 327
| ||||||||| ||||| | | |||||| ||| |||||| | ||| | ||| | |
Sbjct 527 TCTACGAGTGTGCGTCTGACT-CGTTGAGGTTTATTGATAG-ACCTGAGGATGACG-ACT 583
Query 328 GGCCCATCA-TG-----GC---AC---C---TTTGTCCTTGAACGGGAATCTCTATTGGC 372
||||||| | || || || | | |||| || || || ||||||||||||
Sbjct 584 GGCCCATAACTGAAACAGCTAAACGATCAAATGTGTCATTAAATGGAAATCTCTATTGGT 643
Query 373 TTACTCAT-G-AA-CCTGAGACTTATAAGTATTTCATCCGAAGCTTTGATTTCTCCAAGG 429
|| | | | || ||||| | || |||| | |||||||| |||||||||||| | ||
Sbjct 644 TTGGTTGTAGTAATTATGAGAATGATGAGTACTACATCCGAATCTTTGATTTCTCGACGG 703
Query 430 A-GATATTCAAACCTTTTTGTCTCCTGCCCTGTCTAAA-GAACCGTTCT-CGAGATGAAC 486
| ||| |||||||||||||||||||| || |||| ||| || || | | | |||||||
Sbjct 704 AGGAT-TTCAAACCTTTTTGTCTCCTTCCGTGTC-AAATGAGCCATAGTAC-TGATGAAC 760
Query 487 TTGTCCTCGCGGTTTTTAAAAGAGATCGGTTTTCGTTGTTAAAGCAATGTAATGTAACA- 545
||||||||||||||| ||| |||||||||||||||||||||||||||| | |||||||
Sbjct 761 TTGTCCTCGCGGTTTATAAGGGAGATCGGTTTTCGTTGTTAAAGCAATGCAGTGTAACAA 820
Query 546 GGGAAGATTGATATTTGGGTAACGAA-GA-AG-A--AG-ATTGA---TGG-A--GA-GGA 592
|||| ||||| | ||||||||||| || || | || | ||| ||| | | |||
Sbjct 821 GGGA-GATTGGGGTATGGGTAACGAAAGAGAGGATTAGTAATGACAATGGGAACGGTGGA 879
Query 593 -AGTA-GTG---TGGATAAACTTGATGACTTTGCCAACAAC-TAACTTGTCTAAGTTGGT 646
|| ||| ||| |||| |||||||| ||| ||| ||| ||||||| | ||||| |
Sbjct 880 GAGGGCGTGGAGTGGTTAAAGTTGATGACCTTGTCAA-AACCTAACTTGCCAAAGTTA-T 937
Query 647 TAATAAGTTTTGTGGCATTAGTTACTTCATCTATGACAAGACCCTA-ATCATGTGTTGTG 705
| | || | | |||||||||||||||||| |||||| || | ||||||| ||
Sbjct 938 T--TG-GTAC-G-G---TTAGTTACTTCATCTATGGGAAGACCTTATA-CATGTGTAATG 988
Query 706 GCGACCACCAAACTGGAGCCGCTTGCATCTATTTTGTGAAGGGA-GATATATTCAAGAAG 764
||||| | |||||| | |||||||||||| |||||| |||| ||| | | |||||||
Sbjct 989 GCGACGATGAAACTGCATTGGCTTGCATCTATATTGTGA-GGGAAGATGTGTGCAAGAAG 1047
Query 765 ATTCAAATAGATTCCGGTAGTGTTCGGTTTTC-TCACTGTGTCTAT-CTTCCAAATTTGT 822
||||||||| ||| || | | || | | | ||||||||| ||| | |||| ||||
Sbjct 1048 TTTCAAATAGGTTCTGGAAATATTAACTGT-CGTCACTGTGTTTATACACCCAA-TTTGC 1105
Query 823 TATCGGTTCCTTTAT 837
| ||| |||||||||
Sbjct 1106 TCTCGCTTCCTTTAT 1120
> AT3G51171.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:19010805-19012008 FORWARD LENGTH=1204
Length=1204
Score = 200 bits (108), Expect = 2e-50
Identities = 571/782 (73%), Gaps = 81/782 (10%)
Strand=Plus/Plus
Query 39 ACCATCACCGCTTGCGATGGGTTATTGTTTCGTGACT-TTTGG-AAG--C-AAGGTG-TT 92
|||||||| |||||||||||||| |||||| || ||| || || || | |||| |
Sbjct 337 ACCATCACTGCTTGCGATGGGTTCTTGTTTTGTAACTCTTGGGCTAGTCCTAAGGGGACA 396
Query 93 GCGGTTTGGAATCCGTGGTTGAGACAGGTTGGATGGATCGAGTACGAGGATAAAGGTTTT 152
|| |||||||||||||||||| ||||||| |||||||||||||||||||||||| |||
Sbjct 397 GCTTTTTGGAATCCGTGGTTGAAACAGGTTAAATGGATCGAGTACGAGGATAAAGG-TTT 455
Query 153 C-ATTTTTGCGG-TGTAGGATACGATAGTTGTAAACCCGAAAAGAG-TTACAAGATCTTG 209
| || | || || | |||||||||||| | || | || |||| | |||||| ||||||
Sbjct 456 CAATGTCTGTGGCT-TAGGATACGATAATACTAGAGACGGAAAG-GTTTACAAAATCTTG 513
Query 210 GGGTATTTTAAT-TGTCTCCGTAAAGTCA-GCGA-CACTTACCATGTA-AGTTACC-GCA 264
||||| |||||| |||| || | ||| | | || | |||| | ||| | ||| | |
Sbjct 514 GGGTA-TTTAATGTGTCGCCCTGAAG--ATGGGAGCTCTTA-C--GTATA-CCACCAG-A 565
Query 265 GAGTTGCGATTTACGAGTGTTCGTCTCATGCGTTGAAGTTCATTGATGCCCCTTTCACGC 324
|||||||||| ||||| ||| | ||||| ||||| ||||| ||||| | || |
Sbjct 566 GAGTTGCGATCTACGACTGTGCCTCTCACGCGTTCAAGTTTATTGAAATATCGAACAAGG 625
Query 325 AGTGG--CC-CATC-ATG--GCAC----C--TTTGTCCTTGAACGGGAATCTCTATTGGC 372
| ||| || | | ||| ||| | | |||| |||||||| |||||||||||||
Sbjct 626 ACTGGTTCCTAACCGATGTTACACGATTCAGTGTGTCTTTGAACGGAAATCTCTATTGGC 685
Query 373 TTACTCATGA-ACCTGAGACTTATAAGTATT-TCATCCGAA-GCTTTGATTTCTCCAAGG 429
|| ||| | | || | ||| || | | || |||||| || | ||||||||||| | ||
Sbjct 686 TTTCTCCT-ATTCCCAACACTGATGACT-TTCTCATCC-AATGTTTTGATTTCTCTAGGG 742
Query 430 AGATATTCAAACCTTTTTGTCTCCTGCCCTGTCTAAAGAACCG-TTCTCGAGATGAACTT 488
|||||| |||||| |||||||| || || |||| ||| | | || ||| ||||
Sbjct 743 AGATATGCAAACCCTTTTGTCTTCTTCCTTGTCGGAAG-TTTGATGCTTTCGATTTACTT 801
Query 489 GTCCTCGCGGTTTTTAAAAGAGATCGGTTTTCGTTGTTAAAGCAATGTAATGTA-ACAGG 547
| | ||||| | ||||| |||| || ||||||||||||||| || | ||| |
Sbjct 802 G---T--AAGTTTTCAGGGGAGATAGGTTATCCTTGTTAAAGCAATGTTAT-AAGACAAG 855
Query 548 GAAGATTGATATTTGGGTAACGAAG---AAGA-AGAT--T-G--------ATGG---AGA 589
|||| |||| |||||||| |||||| |||| ||| | | |||| |||
Sbjct 856 GAAGGTTGAGATTTGGGTTACGAAGAATAAGATTGATACTAGTAACAACAATGGATCAGA 915
Query 590 GGAAGTAGTGTGGATAAACTTGATGACTTTGCCAACAACTAACTTGTCTAAGTTGGTTAA 649
||||| |||||||| ||||| |||| |||| | ||| ||||||| | || || || |
Sbjct 916 CGAAGTTGTGTGGATTCACTTGTTGACGTTGCTACCAAATAACTTGCCAAACTT-ATTTA 974
Query 650 T-AAGTTTTGTGGCATTAGTTACTTCATCTATGACAAGACC-C-TA-ATCATGTGTTGTG 705
| ||| || ||||||||||||||||||||||||||||||| | | ||||| | |||||
Sbjct 975 TCGAGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCTTCATCATTTATTGTG 1034
Query 706 GC-GACCACCAA-ACTGGA-GCCGCTTGCATCTATTTTGTGAAGGGAGATATATTCAAGA 762
| ||| | || ||| | || |||||||||||| |||| | ||||||| | ||||||
Sbjct 1035 -CTGACGAG-AACACTT-ATGCGGCTTGCATCTATATTGTCAGGGGAGATTTGCTCAAGA 1091
Query 763 AG 764
||
Sbjct 1092 AG 1093
> AT3G16555.1 | Symbols: | F-box family protein | chr3:5633426-5634542
FORWARD LENGTH=1050
Length=1050
Score = 193 bits (104), Expect = 3e-48
Identities = 542/742 (73%), Gaps = 76/742 (10%)
Strand=Plus/Plus
Query 125 ATGGATCGAGTACGAGGATAAAGGTTTTC-ATTTTTGCGGTGTAGGATACGATAGTTGTA 183
|||||||||||||||| ||||||| |||| || | || || ||||||||||||| | ||
Sbjct 318 ATGGATCGAGTACGAGAATAAAGG-TTTCAATGTATGTGGCGTAGGATACGATAATACTA 376
Query 184 AACCCGAAAAGAG-TTACAAGATCTTGGGGTATTTTA-ATTGTCTCCGTAAAGTCAGCGA 241
|| || ||| | |||||| ||||||| ||| |||| | |||| |||| ||| || |
Sbjct 377 GGCCTGAGAAG-GTTTACAAAATCTTGGAGTA-TTTAGAGTGTCGCCGTGAAG--AGAG- 431
Query 242 CACTTACCATGTAAGTTACC-GCAGAGTTGCGATTTACGAGTGTTCGTCTCATGCGTTGA 300
| | | | | | | |||| | ||||||||||| ||||||||| | ||||||||||| |
Sbjct 432 CTC-GA--ACGCATGCTACCAG-AGAGTTGCGATCTACGAGTGTGCCTCTCATGCGTTCA 487
Query 301 AGTTCATTGATGCCCCTTTCACGCAGTGGCCCAT---C-ATG-GC-AC----C--TTTGT 348
|||| |||||| | || || | ||| ||| | ||| | || | | |||
Sbjct 488 AGTTTATTGATACTTCTAACAAGGTCTGGTTCATAAGCGATGTTCAACGATACAGTGTGT 547
Query 349 CCTTGAACGGGAATCTCTATTGGCTTACTCATGAACCTGAGACTTATAAGTATTTCATCC 408
||||||||| ||||||||||||||| || || | | ||||| | | |||||
Sbjct 548 GCTTGAACGGAAATCTCTATTGGCTTTCTTTTG-A--T--GACTT-T-CG-----CATCC 595
Query 409 GAAGCTTTGATTTCTCCAAGGAGATATTCAAACCTTTTTGTCTCCTGCCCTGTCTAAAGA 468
| ||||||||||||| | ||||||| ||||||| ||||||||||| || |||| |||
Sbjct 596 TATGCTTTGATTTCTCGAGGGAGATAGTCAAACCCTTTTGTCTCCTTCCGTGTCGGAAG- 654
Query 469 ACCG-T-TCTCGAGATGAACTTGTCCTCGC-GGTTTTTAAAAGAGATCGGTTTTCGTTGT 525
| | | | ||| ||||| |||| | ||||| || ||||| |||| || ||||
Sbjct 655 TTTGATAAAT-GCGATTTACTTGCCCTC-CAAGTTTTCAAGGGAGATAGGTTATCCTTGT 712
Query 526 TAAAGCAATGTAATGT-A-ACAGGGAAGATTGATATTTGGGTAACGAAGAAG-A-A--GA 579
|||| |||||| ||| | ||| ||| |||||| |||||||| ||||||||| | | ||
Sbjct 713 TAAATCAATGT--TGTAAGACAAGGACGATTGAGATTTGGGTTACGAAGAAGAAGATTGA 770
Query 580 -T-T-G--------ATGG---AGAGGAAGTAGTGTGGATAAACTTGATGACTTTGCCAAC 625
| | | |||| ||| ||||| |||||||| | |||| ||||||||||| |
Sbjct 771 TTCTAGTAACAACAATGGATCAGACGAAGTTGTGTGGATTAGCTTGTTGACTTTGCCACC 830
Query 626 AACTAACTTGTCTAAGTTGGTTAATAAGTTTTGTGGCATTAGTTACTTCATCTATGACAA 685
|| ||||||| | || || ||| | || || |||||||||||||||||||||||||||
Sbjct 831 AAATAACTTGCCAAACTTATTTATTGTGTGTTATGGCATTAGTTACTTCATCTATGACAA 890
Query 686 GACC-C-T-AATCATGTGTTGTGGCGACCACCAA-ACTGGAGCCGCTTGCATCTATTTTG 741
|||| | | |||||| | ||||| ||| | || ||| ||| |||||||||||| |
Sbjct 891 GACCACCTTAATCATTTATTGTGAAGACGAG-AACACTTCAGCGGCTTGCATCTATATCA 949
Query 742 TGAAGGGAGATATATTCAAGAAGATTCAAATAGATTCCGGTAG-TGTTCGGTT-TTCTCA 799
| | ||| ||| | ||||||||| || |||| |||||| | | | ||| || || |||
Sbjct 950 TCAGGGGGGATTTGTTCAAGAAGTTTGAAATTGATTCCTCT-GCT-TTCTTTTGTTATCA 1007
Query 800 CTGTGTCTAT-CTTCCAAATTT 820
|||||| ||| || |||| |||
Sbjct 1008 CTGTGTTTATGCTCCCAATTTT 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41895278598
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5