BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925890
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66770.1 | Symbols: SWEET6, AtSWEET6 | Nodulin MtN3 family p... 1136 0.0
> AT1G66770.1 | Symbols: SWEET6, AtSWEET6 | Nodulin MtN3 family
protein | chr1:24906451-24907236 REVERSE LENGTH=786
Length=786
Score = 1136 bits (615), Expect = 0.0
Identities = 729/786 (93%), Gaps = 0/786 (0%)
Strand=Plus/Plus
Query 21 ATGGTACATGCACAGTTGAATCTTATTCGGAAGATTGTAGGAATATTAGGAAACTTCATC 80
||||| |||| ||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1 ATGGTGCATGAACAGTTGAATCTTATTCGGAAGATTGTTGGTATATTAGGAAACTTCATC 60
Query 81 TCTCTATGTTTGTTTCTGTCACCAACGCCAACGTTTGTACACATAGTGaaaaaaaaaTCA 140
||||||||||||||||| || ||||||||||||||| |||||||||||||||| || |||
Sbjct 61 TCTCTATGTTTGTTTCTATCGCCAACGCCAACGTTTATACACATAGTGAAAAAGAAGTCA 120
Query 141 GTGGAAAAATACTCACCAATGCCATATTTAGCCACTCTCCTAAACTGTATGGTTCGGGCT 200
|||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||| |||
Sbjct 121 GTGGAAAAATACTCACCATTGCCATATTTAGCGACTCTCCTAAACTGTTTGGTTCGTGCT 180
Query 201 CTTTATGGACTTCCTATGGTTCATCCTGATAGCACCTTGCTCGTTACAATCAGCGGTATA 260
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CTTTATGGACTTCCTATGGTTCATCCTGATAGCACCTTGCTCGTTACAATAAGCGGTATA 240
Query 261 GGAATCGTGATCGAAATCGTTTTCCTTACCATCtttttcgttttttGTGATCGTCAACAA 320
|||||| ||||||||||||||||||||| |||||||| || ||||||| ||||||||||
Sbjct 241 GGAATCACGATCGAAATCGTTTTCCTTACAATCTTTTTTGTATTTTGTGGTCGTCAACAA 300
Query 321 CATCGGTTGGTAATATCCGCTGTTTTAACCGTTCAAGCTGCGTTTGTGGCTACTCTTGCG 380
||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||
Sbjct 301 CATCGGTTGGTAATATCCGCTGTTTTAACCGTTCAAGTTGTGTTTGTGGCTACCCTTGCG 360
Query 381 GTTTTGGTATTAACCCTCGAACACACTACCGAACAACGGACAATAAGCGTTGGGATTGTT 440
|||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 361 GTTTTGGTCTTAACTCTCGAACACACTACCGATCAACGGACGATAAGCGTTGGGATTGTA 420
Query 441 TCTTGCGTTTTCAACGCTATGATGTATGCTTCTCCATTGTCCGTCATGAAAATGGTAATA 500
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 TCTTGCGTTTTCAACGCTATGATGTATGCTTCTCCATTGTCTGTCATGAAAATGGTAATA 480
Query 501 AAAACAAAAAGTTTAGAGTTCATGCCGTTTTTGTTATCCGTAGTTAGTTTTATAAATGCA 560
|||||||||||||| ||||||||||||||||||||||| |||||| ||||| |||| |||
Sbjct 481 AAAACAAAAAGTTTGGAGTTCATGCCGTTTTTGTTATCGGTAGTTGGTTTTCTAAACGCA 540
Query 561 GGTGTTTGGACAATTTATGGCTTTGTGCCTTTTGATCCATTTTTGGCTATTCCAAATGGG 620
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 541 GGTGTTTGGACAATTTATGGCTTTGTGCCTTTTGATCCATTCCTGGCTATACCAAATGGG 600
Query 621 ATTGGGTGTGTGTTTGGACTAGTACAATTAATATTGTATGGTACCTACTATGAATCCACC 680
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| |||
Sbjct 601 ATTGGGTGTGTTTTTGGACTAGTACAGTTAATATTGTATGGTACCTACTACAAATCTACC 660
Query 681 AAAGGGATAATGGCGGAAAGGAAGGAGCGACTCGGCTACGTTGGTGAAGTTGGGTTATCT 740
||||||||||||| |||||||||| | |||||||| |||||||||||||| || |||||
Sbjct 661 AAAGGGATAATGGAGGAAAGGAAGAACCGACTCGGTTACGTTGGTGAAGTCGGATTATCC 720
Query 741 ATTGCGATCGGTCAAACGGAACCTGAGAACATCGCATATTTCAACAAAAGAGTTAACGGT 800
| |||||||| |||||| ||||| ||||||||| ||||||| ||||||||||||| |||
Sbjct 721 AATGCGATCGCTCAAACTGAACCCGAGAACATCCCATATTTAAACAAAAGAGTTAGCGGC 780
Query 801 GTTTGA 806
||||||
Sbjct 781 GTTTGA 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40237551747
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5