BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925891
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66780.1 | Symbols: | MATE efflux family protein | chr1:249... 1953 0.0
AT1G64820.1 | Symbols: | MATE efflux family protein | chr1:240... 1230 0.0
> AT1G66780.1 | Symbols: | MATE efflux family protein | chr1:24909213-24911485
FORWARD LENGTH=1458
Length=1458
Score = 1953 bits (1057), Expect = 0.0
Identities = 1262/1361 (93%), Gaps = 13/1361 (1%)
Strand=Plus/Plus
Query 85 ACAGAGATGATGAAGAAGGTAAGCTTTATGGCTGCTCCAATGGTGGCTGTGGCTGCTTCT 144
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 97 ACAGAGATGATGAAGAAGGTAAGCTTCATGGCTGCACCAATGGTGGCTGTGGCTGCTTCT 156
Query 145 CAGTACCTCCTTCAAGTTATCTCCATTGTTATGGCCGGTCACTTGGACGAGctctctctc 204
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct 157 CAATACCTCCTTCAAGTTATCTCCATTGTTATGGCTGGTCACTTGGACGAGCT-T-TCTC 214
Query 205 tctcCGCCGTTGCTATCGCTACTTCTCTTACCAACGTCACCGGC-T-----TCA--TTTG 256
|||| ||||||||||| || |||||||||||||| ||||||||| | ||| ||||
Sbjct 215 TCTCAGCCGTTGCTATTGCCACTTCTCTTACCAATGTCACCGGCTTCAGCCTCATCTTTG 274
Query 257 GATTGGCAGGTGCGTTAGAGACACTGTGTGGTCAAGCTTTTGGAGCAGAGCAATTTAGGA 316
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 275 GATTGGCAGGTGCGTTAGAGACACTGTGTGGTCAAGCTTTTGGAGCTGGGCAATTTAGGA 334
Query 317 AAATCGGTGCATACACTTATAGCTCAATGCTATGTCTTCTCTTGTTTTGTTTCCCAATCT 376
| ||| ||||||||||||| ||||||||||||||||||||||| | |||||||||||||
Sbjct 335 ATATCAGTGCATACACTTACGGCTCAATGCTATGTCTTCTCTTGGTCTGTTTCCCAATCT 394
Query 377 CACTTTTGTGGGTTTTTATGGACAAACTATTGGAGCTTTTCCATCAAGATCCTCTCATCT 436
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 395 CACTTTTGTGGGTTTTTATGGACAAACTCTTGGAGCTTTTCCATCAAGATCCTCTTATCT 454
Query 437 CTCATTTAGCGTGTAGATATTCGATCTGGCTTATACCGGCTTTATTCGGATACTCTGTTC 496
|||| ||||| |||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 455 CTCAATTAGCTTGTAGATACTCAATCTGGCTCATACCGGCTTTATTCGGATACTCTGTTC 514
Query 497 TTCAATCTATGACTCGGTTTTCCCAGTCACAAGGATTGGTTCTACCTCTCTTCTTGAGCT 556
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 515 TTCAATCTATGACTCGATTTTTCCAGTCACAAGGATTGGTTCTACCTCTCTTCTTGAGCT 574
Query 557 CTCTCGGAGCTCTCAGTTTTCACATTCCCTTTTCGTGGCTTCTTGTTTATAAACTGAGAT 616
|||| ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 575 CTCTTGGAGCTCTCTTTTTTCACGTTCCCTTTTCGTGGCTTCTTGTCTATAAACTGAGAT 634
Query 617 TTGGAATCTTCGGCTCTGCTTTGTCCATAGGTTTTTCGTATTGGCTCAACGTAGGTTTGC 676
| |||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 TCGGAATCGTCGGCGCCGCTTTGTCCATAGGTTTTTCGTATTGGCTCAACGTAGGTTTGC 694
Query 677 TTTGGGTTTTCATGAGAGATTTTGATCTGTATCGCGAAAACAGGAATCTTCGGGCGCAAG 736
|||||| |||||||||||| | || ||| ||||| ||||| ||||||||||||| ||||
Sbjct 695 TTTGGGCTTTCATGAGAGACTCTGCTCTCTATCGAAAAAACTGGAATCTTCGGGCACAAG 754
Query 737 AAATCTTTTTGAGCATGAAGCAGTTCATTACCCTCGCAATTCCCTCTGCGATGATGACTT 796
|||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct 755 AAATCTTTTTGAGCATGAAGCAGTTCATTACCCTAGCAATTCCCACTGCAATGATGACTT 814
Query 797 GCCTGGAATGGTGGTCGTTTGAGCTTCTTATACTAATGTCCGGACTCTTACCAAACTCAA 856
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 815 GCCTGGAATGGTGGTCGTTTGAGCTTCTTATACTAATGTCAGGACTCTTACCAAACTCAA 874
Query 857 AGCTCGAAACATCGGTATTATCCATTTGCCTAACAATGTCGTCTCTGCATTACGTTATTG 916
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 875 AGCTCGAAACATCGGTCCTATCCATTTGCCTAACAATGTCGTCTCTGCATTACGTTATCG 934
Query 917 TGAATGCAATAGGAGCAGCCGCGAGCACACACGTCTCAAACAAGCTAGGAGCTGGAAATC 976
||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 935 TGAATGCCATAGGAGCAGCAGCGAGCACACATGTCTCAAACAAGCTAGGAGCTGGAAATC 994
Query 977 CGAAGGCAGCTCGAGCCGTTGCTGATTCTGCGATTTTTCTCAGCGTGATTGATGCAGCCA 1036
| |||||||||||| | | ||| |||||||||||||||| || |||||||||||||||
Sbjct 995 CAAAGGCAGCTCGATCTGCGGCTAATTCTGCGATTTTTCTTGGCATGATTGATGCAGCCA 1054
Query 1037 TAGTAAGCATCACTCTCTA-TGCCTACCGAAGAAATTGGGCTTATATATTCAGTAATGAG 1095
|||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||
Sbjct 1055 TAGTAAGCATCAGTCTCTACAG-CTACAGAAGAAATTGGGCTTATATATTCAGTAATGAG 1113
Query 1096 AGTGAAGTCGCTGACTATGTAACTCAAATCACACCCTTTCTATGCCTATCAATTGGTGTT 1155
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 1114 AGTGAAGTCGCTGACTATGTCACTCAAATCACACCCTTTCTCTGTCTATCAATTGGTGTT 1173
Query 1156 GACAGCTTTCTCGCCGTACTCTCAGGAGTTGCTAGAGGAACAGGGTGGCAACATATAGGA 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 GACAGCTTTCTCGCCGTACTCTCAGGAGTTGCTAGAGGAACAGGGTGGCAACATATAGGA 1233
Query 1216 GCTTATGCAAACATAGGGTCATATTATCTGGTCGGTATCCCGGTAGGTTCGATCTTGTGT 1275
||||||||||||||||| || |||||||| ||||| |||||||||||||| |||||||||
Sbjct 1234 GCTTATGCAAACATAGGATCGTATTATCTAGTCGGGATCCCGGTAGGTTCAATCTTGTGT 1293
Query 1276 TTCGTTGTGAAATTGAGAGGGAAAGGACTTTGGATCGGTATATTGATTGGCTCTACTTTA 1335
|| || ||||||||||||||||||||||||||||||||||||||| | || || ||| ||
Sbjct 1294 TTTGTAGTGAAATTGAGAGGGAAAGGACTTTGGATCGGTATATTGGTAGGTTCCACTCTA 1353
Query 1336 CAAACGATTGTTCTTGCTCTTGTCACTTTCTTCACCAATTGGGAACAAGAGGCAGTGAAG 1395
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1354 CAAACGATTGTTCTTGCTCTTGTCACTTTCTTCACCAATTGGGAACAAGAGGTAGCGAAG 1413
Query 1396 GCTAGAGACAGAGTAACCGAGATGACATCACAAGGCAATCA 1436
|||||||||||||||| |||||||| | |||||| |||||
Sbjct 1414 GCTAGAGACAGAGTAATCGAGATGATACCACAAGA-AATCA 1453
> AT1G64820.1 | Symbols: | MATE efflux family protein | chr1:24088605-24090558
FORWARD LENGTH=1509
Length=1509
Score = 1230 bits (666), Expect = 0.0
Identities = 1198/1450 (83%), Gaps = 56/1450 (4%)
Strand=Plus/Plus
Query 88 GAGATGATGAAGAAGGTAAGCTTTATGGCTGCTCCAATGGTGGCTGTGGCTGCTTCTCAG 147
||||||||||||||||| |||| ||||| |||||||||||||| || | | ||||||
Sbjct 82 GAGATGATGAAGAAGGTGAGCTCCATGGCGGCTCCAATGGTGGCAGTTTCGGTTTCTCAA 141
Query 148 TACCTCCTTCAAGTTATCTCCATTGTTATGGCCGGTCACTTGGACGAGctctctctctct 207
| |||||||||||| |||||||| |||||||| ||||| ||||||||| ||||| ||||
Sbjct 142 TTCCTCCTTCAAGTCATCTCCATGGTTATGGCTGGTCATTTGGACGAG--CTCTCGCTCT 199
Query 208 cCGCCGTTGCTATCGCTACTTCTCTTACCAACGTCAC------CGGCTTCAT--TTGGAT 259
| || || || || || ||||| || ||||| ||||| | || |||| |||| |
Sbjct 200 CAGCTGTCGCAATTGCCACTTCCCTCACCAATGTCACTGGTTTCAGCCTCATCGTTGGGT 259
Query 260 TGGCAGGTGCGTTAGAGACACTGTGTGGTCAAGCTTTTGGAGCAGAGCAATTTAGG-AAA 318
| |||||||||||||| || || || |||||||||||||||||||| |||||| || |||
Sbjct 260 TTGCAGGTGCGTTAGACACTCTTTGCGGTCAAGCTTTTGGAGCAGAACAATTT-GGAAAA 318
Query 319 ATCGGTGCATACACTTATAGCTCAATGCTATGTCTTCTC-TTGTTTTGTTTCCCAATCTC 377
|| |||||||||||||| ||||||||||| ||||||||| || || ||||| ||||||
Sbjct 319 ATTGGTGCATACACTTACAGCTCAATGCTCTGTCTTCTCGTT-TTCTGTTTTTCAATCT- 376
Query 378 ACTTTTGT-GGGTTTTT-ATGGACAAACTATTGGAGCTTTTCCATCAAGATCCTCTCATC 435
|| | || ||||||| |||||||| || |||||| |||||||||||||||||||||||
Sbjct 377 -CTATCGTATGGTTTTTCATGGACAAGCTCTTGGAGATTTTCCATCAAGATCCTCTCATC 435
Query 436 TCTCATTTAGCGTGTAGATATTCGATCTGGCTTATACCGGCTTTATTCGGATACTCTGTT 495
||||| ||||| || ||||| || |||||||| ||||||||||||||||||| | || ||
Sbjct 436 TCTCAATTAGCTTGCAGATACTCAATCTGGCTCATACCGGCTTTATTCGGATTCACTCTT 495
Query 496 CTTCAATCTATGACTCGGT-TTTCCCAGTCACAAGGATTGGTTCTACCTCTCTTCTTGAG 554
|||||| |||||||||||| ||||| ||||||||||| | ||| ||||||||| ||||
Sbjct 496 CTTCAACCTATGACTCGGTATTTCC-AGTCACAAGGAATAACTCTTCCTCTCTTCGTGAG 554
Query 555 CTCTCTCGGAGCTCTCAGTTTTCACATTCCCTTT-TCGT-GGCTTCTTGTTTATAAACTG 612
|||||| |||||||| ||||||||||||| ||| | || |||||||||| |||||||||
Sbjct 555 CTCTCTTGGAGCTCTTTGTTTTCACATTCC-TTTCT-GTTGGCTTCTTGTCTATAAACTG 612
Query 613 AGATTTGGAATC-TTCGGCTCTGCTTTGTCCATAGGTTTTTCGTATTGGCTCAACGTAGG 671
| ||||||||| || ||| | ||||||||||| |||||||| |||||||||||||||
Sbjct 613 AAATTTGGAATAGTT-GGCGCCGCTTTGTCCATCGGTTTTTCATATTGGCTCAACGTATT 671
Query 672 TTTGCTTTGGGTTTTCATGAGAGATTTTGATCTGTATCGCGAAAACAGGAATCTTCGGGC 731
|||||||||| ||||||||||| | | || | || |||| |||| | ||||||| ||
Sbjct 672 TTTGCTTTGGATTTTCATGAGATACTCTGCTTTGCATCGTGAAATGAAGAATCTT-GGTT 730
Query 732 -GCAAGAAATCTTTTTGAGCATGAAGCAGTTCATTACCCTCGCAATTCCCTCTGCGATGA 790
||||||| || | | |||||||||||||||||| ||||||| || |||||||| ||||
Sbjct 731 TGCAAGAACTCATCTCGAGCATGAAGCAGTTCATCGCCCTCGCGATCCCCTCTGCAATGA 790
Query 791 TGACT-TGCCTGGAATGGTGGTCGTTTGAGCTTCTTA-TACTAATGTCCGGACTCTTACC 848
||| | |||||||||||||||||||||||| |||| | |||||||||| |||||||||||
Sbjct 791 TGA-TATGCCTGGAATGGTGGTCGTTTGAGATTCT-ACTACTAATGTCTGGACTCTTACC 848
Query 849 AAACTCAAAGCTCGAAACATCGGT-ATTATCCATTTGCCTAACAATGTCGTCTCTGCATT 907
|||||||||||||||||||||||| || |||||||||||| |||| ||| || ||||||
Sbjct 849 AAACTCAAAGCTCGAAACATCGGTGAT-ATCCATTTGCCTCACAACATCGGCTGTGCATT 907
Query 908 ACGTTATTGTGAATGCAATAGGAGCAGCCGCGAGCACACACGTCTCAAACAAGCTAGGAG 967
|||| | |||||||| ||||||||| |||| |||||||| ||||||||| |||||||||
Sbjct 908 TCGTTCTGGTGAATGCGATAGGAGCATCCGCAAGCACACATGTCTCAAACGAGCTAGGAG 967
Query 968 CTGGAAATCCGAAGGCAGCTCGAGCCGTTGCTGATTCTGCGATTTTTCTCAGCG-TGATT 1026
||||||||| | |||||||||||||| | | ||||||| ||||| || | | || ||
Sbjct 968 CTGGAAATCATAGGGCAGCTCGAGCCGCGGTTAATTCTGCCATTTTCCTTGGTGGTG-TT 1026
Query 1027 GATGCAGCCATAGTAAGCATCACTCTCTAT-GCCTACCGAAGAAA-TTGGGCTTATATAT 1084
| |||| ||| || |||||| || || | ||||||| ||| ||||| |||| |||
Sbjct 1027 GGTGCATTAATAACAACCATCACACTTTACAGT-TACCGAA-AAAGTTGGGGTTATGTAT 1084
Query 1085 TCAGTAATGAGAGTGAAGTCGCT-GACTATGTAACTCAAATCACACCCTTTCTATGCCTA 1143
|||| || ||||| ||||| | | | ||| | ||| |||||||||||| |||| ||||||
Sbjct 1085 TCAGCAACGAGAGAGAAGTGGTTCG-CTACGCAACCCAAATCACACCCATTCTCTGCCTA 1143
Query 1144 TCAATTGGT-GTTGACAGCTTTCTCGCCGTACTCTCAGGAGTTGCTAGAGGAACAGGGTG 1202
|| ||| | ||| |||||||||||||||| |||||||| ||||| |||||| |||||||
Sbjct 1144 TCCATTT-TCGTTAACAGCTTTCTCGCCGTGCTCTCAGGGGTTGCCAGAGGATCAGGGTG 1202
Query 1203 GCAACATATAGGAGCTTATGCAAACATAGGGTCATATTATCTGGTCGGTATCCCGGTAGG 1262
||||| |||||||| |||||||| | |||| ||||||||||| ||||| |||||| ||||
Sbjct 1203 GCAACGTATAGGAGGTTATGCAAGCTTAGGATCATATTATCTTGTCGGAATCCCGTTAGG 1262
Query 1263 TTCGATCTTGTGTTTCGTTGTGAAATTGAGAGGGAAAGGACTTTGGATCGGTATATTGAT 1322
| | |||||||||| || |||||||||||||||||||||||||||| |||||| | ||
Sbjct 1263 ATGGTTCTTGTGTTTTGTCATGAAATTGAGAGGGAAAGGACTTTGGATTGGTATACTCAT 1322
Query 1323 TGGCTCTACTTTACAAA-CGATTGTTCTTGCTCTTGTCACTTTCTTCACCAATTGGGAAC 1381
| ||| ||| | ||| | |||||| ||||||||||||| |||||||||||||||||||
Sbjct 1323 AGCCTCCACTATCCAACTC-ATTGTTTTTGCTCTTGTCACCTTCTTCACCAATTGGGAAC 1381
Query 1382 AAGAGGCAGTGAAGGCTAGAGACAGAGTAACCGAGATGACA--TCA---CAA-GGCAATC 1435
|||||||| ||| ||||||||||||||| |||||||||| ||| ||| ||||| |
Sbjct 1382 AAGAGGCAACGAAAGCTAGAGACAGAGTATTCGAGATGACACCTCAAGTCAAAGGCAACC 1441
Query 1436 AAGTAACAGAAATGATATTAAAAGAGGATGTACAAGGTTTA-TTAAAAGATATCT-CAGA 1493
|| |||| |||| ||| || |||||||| ||||| |||| |||| |||| | ||||
Sbjct 1442 AAAAAACACAAATTATAGTAGAAGAGGATACACAAGTTTTACTTAATC-ATAT-TGCAGA 1499
Query 1494 AAATGTGTAA 1503
|| |||||||
Sbjct 1500 AACTGTGTAA 1509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75200416410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5