BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925894 Length=385 Score E Sequences producing significant alignments: (Bits) Value AT1G66855.1 | Symbols: | Carbohydrate-binding X8 domain superf... 364 3e-100 AT1G66870.1 | Symbols: | Carbohydrate-binding X8 domain superf... 289 2e-77 AT4G16165.1 | Symbols: | Carbohydrate-binding X8 domain superf... 228 4e-59 AT1G66852.1 | Symbols: | Carbohydrate-binding X8 domain superf... 213 1e-54 > AT1G66855.1 | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr1:24939550-24940013 REVERSE LENGTH=464 Length=464 Score = 364 bits (197), Expect = 3e-100 Identities = 312/365 (85%), Gaps = 18/365 (5%) Strand=Plus/Plus Query 23 AATG-TTTCCGCAATTGAAACTAATCGTCCTTCTATCTCTCGTTGTAATTC-ACCTCCTT 80 |||| ||| ||||||||| ||||||| || || |||||||||||||||| | |||| || Sbjct 2 AATGATTT-CGCAATTGACACTAATCTTCTTTTTATCTCTCGTTGTAATCCAACCT-TTT 59 Query 81 CATGTCTTGGCCAAAAAATGGTGTGT-GTCAGCGGCATCTGCGCCAGATACACAACTACA 139 ||| | |||||||| | ||||||||| | |||| ||||| ||| ||||||||||||| Sbjct 60 CATATTTTGGCCAAGACATGGTGTGTAG-CAGCTGCATCAGCGACAGATACACAACT--- 115 Query 140 ACTACAAGCTAATATTGATTGGGCATGTAGC-ATAGGAAAAGTTGACTATGTAAAAATCA 198 | ||||||||||||||||||||||||| | | ||| |||||||||| ||||||||| | Sbjct 116 --T-CAAGCTAATATTGATTGGGCATGTAACGA-AGGTAAAGTTGACTGTGTAAAAATTA 171 Query 199 AT-CTAGGTGGAGATTGCTATGAACCAAATACTCCTACTAGTCATGCATCATTTGTGATG 257 || || ||||| | |||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 172 ATCCT-GGTGGCGTTTGCTATGAACCAAATACTCTTACTAGCCATGCATCATTTGTGATG 230 Query 258 AATGATTACTACCAGAACCACGGAAACACTGAAGAGACATGTGATTTCAATCATACTGGT 317 ||||||||||| | ||| || || | || ||||||| ||||||| ||||||||||||||| Sbjct 231 AATGATTACTATCGGAATCATGGGAGCATTGAAGAGGCATGTGAATTCAATCATACTGGT 290 Query 318 CAAATAATTGGTGCTGATCCAAGTTATCGTCGTTGTAGGTATACGTAGAATATATTG-TT 376 ||||| ||| ||| |||||||||||||||||||||||||||| ||||||||| || | || Sbjct 291 CAAATCATTAGTGGTGATCCAAGTTATCGTCGTTGTAGGTATTCGTAGAATACAT-GATT 349 Query 377 TGATG 381 ||||| Sbjct 350 TGATG 354 > AT1G66870.1 | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr1:24945484-24946968 REVERSE LENGTH=1485 Length=1485 Score = 289 bits (156), Expect = 2e-77 Identities = 313/387 (81%), Gaps = 17/387 (4%) Strand=Plus/Plus Query 4 ATTTACAAG-CAAACACCAAAATGTTTCCGCAATTGAAACTAATCGTCCTTCTATCTCTC 62 ||| ||||| |||||||| ||||||||||||||||| | | | ||||| | |||||| Sbjct 1071 ATTCACAAGTAAAACACCACAATGTTTCCGCAATTGACAGTTGTATTCCTTTTCTCTCTC 1130 Query 63 GTTGTAATTCA-CCTCCTTCATGTCTTGGCCAAAAAATGGTGTGTGTCAGCGGCATCTGC 121 |||||||| || ||| |||||||||| |||||||| |||||||||| || | ||| || Sbjct 1131 GTTGTAATCCACCCT-CTTCATGTCTCGGCCAAAACATGGTGTGTGGCAAATGTATCGGC 1189 Query 122 -GCCAGATACACAACTACAACTACAAGCTAATATTGATTGGGCATGTAGC-ATAGGAAAA 179 || || ||||||| | |||||||||||||||||||||||||||| | ||||||| Sbjct 1190 GGCAAG-TACACAA-T-----TACAAGCTAATATTGATTGGGCATGTAGTGA-AGGAAAA 1241 Query 180 GTTGACTATGTAAAAATCAATC-TAGGTGGAGATTGCTATGAACCAAATACTCCTACTAG 238 ||||| | || || |||||||| | |||||| ||||| ||| || |||||| | ||| Sbjct 1242 GTTGATTGTGCAACAATCAATCCT-GGTGGATCTTGCTTTGATCCGGATACTCTTGTTAG 1300 Query 239 TCATGCATCATTTGTGATGAATGATTACTACCAGAACCACGGAAACACTGAAGAGACATG 298 |||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| | || Sbjct 1301 TCATGCATCATTTGTGATGAATGATTTCTACCAGAATCACGGAAGCACTGAAGAGGCGTG 1360 Query 299 TGATTTCAATCATACTGGTCAAATAATTGGTGCTGATCCAAGTTATCGTCGTTGTAG-GT 357 | |||| | | |||||||||| | || |||||||||||||||| || ||||| | || Sbjct 1361 TAATTTTACTGGTACTGGTCAAGTCGTTACTGCTGATCCAAGTTATGGTAGTTGT-GTGT 1419 Query 358 ATACGTAGAATATATTGTTTGATGAAT 384 |||| |||| || || |||| |||||| Sbjct 1420 ATACATAGATTACATAGTTTAATGAAT 1446 > AT4G16165.1 | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr4:9164080-9164633 FORWARD LENGTH=554 Length=554 Score = 228 bits (123), Expect = 4e-59 Identities = 310/396 (78%), Gaps = 30/396 (8%) Strand=Plus/Plus Query 1 ATCATTTACAAGC--AAACACCAAAATGTTTCCGCAATTGAAACTAATCGTCCTTCTATC 58 |||| |||||||| |||||| | ||||||||||||||||| |||||| ||||||| || Sbjct 63 ATCAATTACAAGCGAAAACACGACAATGTTTCCGCAATTGACACTAATTTTCCTTCTCTC 122 Query 59 TCTCGTTGTAATTC-ACCTCC-TTCATGTCTTGGCCAAAAAATGGTGTGT-GTC-AGCGG 114 |||| ||||| || ||| || ||||||||| |||||| | ||||||||| | | | | Sbjct 123 TCTCACTGTAA-TCTACC-CCTTTCATGTCTCGGCCAAGACATGGTGTGTAG-CAAAC-C 178 Query 115 CATCTG-CGCCAGATACACAACTACAACTACAAGCTAATATTGATTGGGC-ATGTAG-CA 171 |||| | ||| || ||||||| | |||||||||||||||||| ||| |||||| || Sbjct 179 CATCAGCCGCAAG-TACACAA-T-----TACAAGCTAATATTGATT-GGCTATGTAGTCA 230 Query 172 TAGGAAAAGTTGACTATGTAAAAATCAAT-CTAGGTGGAGATTGCTATGAACCAAATACT 230 |||||| || | |||| |||| | || |||||| ||||| ||||||||||| | Sbjct 231 -AGGAAATCCTGGTTGTGTATTAATCGGTCCT-GGTGGATCTTGCTTTGAACCAAATAAT 288 Query 231 CCTACTAGTCATGCATCATTTGTGATGAATGATTACTACCAGAACCACGGAAACACTGAA 290 || || ||||||||||||||||||||||||||||||||| || |||| ||||||| Sbjct 289 GTTATTAACCATGCATCATTTGTGATGAATGATTACTACCAGTTGCAGGGAAGCACTGAA 348 Query 291 GAGACATGTGATTTCAATCATACTGGTCAAATAATTGGTGCTGATCCAAGTTAT-CGTCG 349 ||| | ||| |||| | | | |||||| ||| |||| | || ||||||||||| | ||| Sbjct 349 GAGGCGTGTAATTTTAGTGGTTCTGGTCGAATCATTGATACTAATCCAAGTTATGC-TCG 407 Query 350 TTGTAG-GTATACGTAGA-A-TATATTGTTTGATGA 382 |||| | |||| |||||| | || || ||||||||| Sbjct 408 TTGT-GTGTATTCGTAGAGAATACATGGTTTGATGA 442 > AT1G66852.1 | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr1:24938500-24938832 REVERSE LENGTH=333 Length=333 Score = 213 bits (115), Expect = 1e-54 Identities = 274/348 (79%), Gaps = 21/348 (6%) Strand=Plus/Plus Query 24 ATGTTTCCGCAATTGAAACTAATCGTCCTTCTATCTCTCGTTGTAATTCA-CCTCCTTCA 82 ||||||||||||||| |||||| | ||| | |||||||||||||| || ||| |||| Sbjct 1 ATGTTTCCGCAATTGTCACTAATTTTTCTTTTCTCTCTCGTTGTAATCCACCCT-TTTCA 59 Query 83 TGTCTTGGCCAAAAAATGGTGTGTGTCAGCGGCATCTGC-GCCAGATACACAACTACAAC 141 ||||| |||||| | |||||||||| || |||| || || || | || ||| || Sbjct 60 TGTCTCGGCCAAGACATGGTGTGTGGCAAATACATCGGCGGCAAG-T--AC-ACT---AC 112 Query 142 TACAAGCTAATATTGATTGGGCATGTAGC-ATAGGAAAAGTTGACTATGTAAAAATCAAT 200 |||||||||||||||||||||||||||| | |||||||||||| | ||||| |||||| Sbjct 113 TACAAGCTAATATTGATTGGGCATGTAGTGA-AGGAAAAGTTGATTGTGTAATGATCAAT 171 Query 201 C-TAGGTGGAGATTGCTATGAACCAAATACTCCTACTAGTCATGCATCATTTGTGATGAA 259 | | |||||| ||||| ||| ||| ||||| || |||||||||||| ||||||||||| Sbjct 172 CCT-GGTGGACCTTGCTTTGATCCAGATACTGTTATTAGTCATGCATCGTTTGTGATGAA 230 Query 260 TGATTACTACCAGAAC-CACGGAAACACTGAAGAGACATGTGATTTCAATCATACTGGTC 318 ||||| ||| |||| ||||| | |||||||||| ||| |||| | | ||| |||| Sbjct 231 TGATTTCTAT-AGAAATCACGGGAGCACTGAAGAG---TGTAATTTTAGTGGTACCGGTC 286 Query 319 AAATAATTGGTGCTGATCCAAGTTATCGTCGTTGTAG-GTATACGTAG 365 || | || | ||||||||||||| || ||||| | |||||||||| Sbjct 287 AAGTCGTTACTTTTGATCCAAGTTATGGTGGTTGT-GTGTATACGTAG 333 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18146657389 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5