BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925894
Length=385
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66855.1 | Symbols: | Carbohydrate-binding X8 domain superf... 364 3e-100
AT1G66870.1 | Symbols: | Carbohydrate-binding X8 domain superf... 289 2e-77
AT4G16165.1 | Symbols: | Carbohydrate-binding X8 domain superf... 228 4e-59
AT1G66852.1 | Symbols: | Carbohydrate-binding X8 domain superf... 213 1e-54
> AT1G66855.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:24939550-24940013 REVERSE LENGTH=464
Length=464
Score = 364 bits (197), Expect = 3e-100
Identities = 312/365 (85%), Gaps = 18/365 (5%)
Strand=Plus/Plus
Query 23 AATG-TTTCCGCAATTGAAACTAATCGTCCTTCTATCTCTCGTTGTAATTC-ACCTCCTT 80
|||| ||| ||||||||| ||||||| || || |||||||||||||||| | |||| ||
Sbjct 2 AATGATTT-CGCAATTGACACTAATCTTCTTTTTATCTCTCGTTGTAATCCAACCT-TTT 59
Query 81 CATGTCTTGGCCAAAAAATGGTGTGT-GTCAGCGGCATCTGCGCCAGATACACAACTACA 139
||| | |||||||| | ||||||||| | |||| ||||| ||| |||||||||||||
Sbjct 60 CATATTTTGGCCAAGACATGGTGTGTAG-CAGCTGCATCAGCGACAGATACACAACT--- 115
Query 140 ACTACAAGCTAATATTGATTGGGCATGTAGC-ATAGGAAAAGTTGACTATGTAAAAATCA 198
| ||||||||||||||||||||||||| | | ||| |||||||||| ||||||||| |
Sbjct 116 --T-CAAGCTAATATTGATTGGGCATGTAACGA-AGGTAAAGTTGACTGTGTAAAAATTA 171
Query 199 AT-CTAGGTGGAGATTGCTATGAACCAAATACTCCTACTAGTCATGCATCATTTGTGATG 257
|| || ||||| | |||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 172 ATCCT-GGTGGCGTTTGCTATGAACCAAATACTCTTACTAGCCATGCATCATTTGTGATG 230
Query 258 AATGATTACTACCAGAACCACGGAAACACTGAAGAGACATGTGATTTCAATCATACTGGT 317
||||||||||| | ||| || || | || ||||||| ||||||| |||||||||||||||
Sbjct 231 AATGATTACTATCGGAATCATGGGAGCATTGAAGAGGCATGTGAATTCAATCATACTGGT 290
Query 318 CAAATAATTGGTGCTGATCCAAGTTATCGTCGTTGTAGGTATACGTAGAATATATTG-TT 376
||||| ||| ||| |||||||||||||||||||||||||||| ||||||||| || | ||
Sbjct 291 CAAATCATTAGTGGTGATCCAAGTTATCGTCGTTGTAGGTATTCGTAGAATACAT-GATT 349
Query 377 TGATG 381
|||||
Sbjct 350 TGATG 354
> AT1G66870.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:24945484-24946968 REVERSE LENGTH=1485
Length=1485
Score = 289 bits (156), Expect = 2e-77
Identities = 313/387 (81%), Gaps = 17/387 (4%)
Strand=Plus/Plus
Query 4 ATTTACAAG-CAAACACCAAAATGTTTCCGCAATTGAAACTAATCGTCCTTCTATCTCTC 62
||| ||||| |||||||| ||||||||||||||||| | | | ||||| | ||||||
Sbjct 1071 ATTCACAAGTAAAACACCACAATGTTTCCGCAATTGACAGTTGTATTCCTTTTCTCTCTC 1130
Query 63 GTTGTAATTCA-CCTCCTTCATGTCTTGGCCAAAAAATGGTGTGTGTCAGCGGCATCTGC 121
|||||||| || ||| |||||||||| |||||||| |||||||||| || | ||| ||
Sbjct 1131 GTTGTAATCCACCCT-CTTCATGTCTCGGCCAAAACATGGTGTGTGGCAAATGTATCGGC 1189
Query 122 -GCCAGATACACAACTACAACTACAAGCTAATATTGATTGGGCATGTAGC-ATAGGAAAA 179
|| || ||||||| | |||||||||||||||||||||||||||| | |||||||
Sbjct 1190 GGCAAG-TACACAA-T-----TACAAGCTAATATTGATTGGGCATGTAGTGA-AGGAAAA 1241
Query 180 GTTGACTATGTAAAAATCAATC-TAGGTGGAGATTGCTATGAACCAAATACTCCTACTAG 238
||||| | || || |||||||| | |||||| ||||| ||| || |||||| | |||
Sbjct 1242 GTTGATTGTGCAACAATCAATCCT-GGTGGATCTTGCTTTGATCCGGATACTCTTGTTAG 1300
Query 239 TCATGCATCATTTGTGATGAATGATTACTACCAGAACCACGGAAACACTGAAGAGACATG 298
|||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| | ||
Sbjct 1301 TCATGCATCATTTGTGATGAATGATTTCTACCAGAATCACGGAAGCACTGAAGAGGCGTG 1360
Query 299 TGATTTCAATCATACTGGTCAAATAATTGGTGCTGATCCAAGTTATCGTCGTTGTAG-GT 357
| |||| | | |||||||||| | || |||||||||||||||| || ||||| | ||
Sbjct 1361 TAATTTTACTGGTACTGGTCAAGTCGTTACTGCTGATCCAAGTTATGGTAGTTGT-GTGT 1419
Query 358 ATACGTAGAATATATTGTTTGATGAAT 384
|||| |||| || || |||| ||||||
Sbjct 1420 ATACATAGATTACATAGTTTAATGAAT 1446
> AT4G16165.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr4:9164080-9164633 FORWARD LENGTH=554
Length=554
Score = 228 bits (123), Expect = 4e-59
Identities = 310/396 (78%), Gaps = 30/396 (8%)
Strand=Plus/Plus
Query 1 ATCATTTACAAGC--AAACACCAAAATGTTTCCGCAATTGAAACTAATCGTCCTTCTATC 58
|||| |||||||| |||||| | ||||||||||||||||| |||||| ||||||| ||
Sbjct 63 ATCAATTACAAGCGAAAACACGACAATGTTTCCGCAATTGACACTAATTTTCCTTCTCTC 122
Query 59 TCTCGTTGTAATTC-ACCTCC-TTCATGTCTTGGCCAAAAAATGGTGTGT-GTC-AGCGG 114
|||| ||||| || ||| || ||||||||| |||||| | ||||||||| | | | |
Sbjct 123 TCTCACTGTAA-TCTACC-CCTTTCATGTCTCGGCCAAGACATGGTGTGTAG-CAAAC-C 178
Query 115 CATCTG-CGCCAGATACACAACTACAACTACAAGCTAATATTGATTGGGC-ATGTAG-CA 171
|||| | ||| || ||||||| | |||||||||||||||||| ||| |||||| ||
Sbjct 179 CATCAGCCGCAAG-TACACAA-T-----TACAAGCTAATATTGATT-GGCTATGTAGTCA 230
Query 172 TAGGAAAAGTTGACTATGTAAAAATCAAT-CTAGGTGGAGATTGCTATGAACCAAATACT 230
|||||| || | |||| |||| | || |||||| ||||| ||||||||||| |
Sbjct 231 -AGGAAATCCTGGTTGTGTATTAATCGGTCCT-GGTGGATCTTGCTTTGAACCAAATAAT 288
Query 231 CCTACTAGTCATGCATCATTTGTGATGAATGATTACTACCAGAACCACGGAAACACTGAA 290
|| || ||||||||||||||||||||||||||||||||| || |||| |||||||
Sbjct 289 GTTATTAACCATGCATCATTTGTGATGAATGATTACTACCAGTTGCAGGGAAGCACTGAA 348
Query 291 GAGACATGTGATTTCAATCATACTGGTCAAATAATTGGTGCTGATCCAAGTTAT-CGTCG 349
||| | ||| |||| | | | |||||| ||| |||| | || ||||||||||| | |||
Sbjct 349 GAGGCGTGTAATTTTAGTGGTTCTGGTCGAATCATTGATACTAATCCAAGTTATGC-TCG 407
Query 350 TTGTAG-GTATACGTAGA-A-TATATTGTTTGATGA 382
|||| | |||| |||||| | || || |||||||||
Sbjct 408 TTGT-GTGTATTCGTAGAGAATACATGGTTTGATGA 442
> AT1G66852.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:24938500-24938832 REVERSE LENGTH=333
Length=333
Score = 213 bits (115), Expect = 1e-54
Identities = 274/348 (79%), Gaps = 21/348 (6%)
Strand=Plus/Plus
Query 24 ATGTTTCCGCAATTGAAACTAATCGTCCTTCTATCTCTCGTTGTAATTCA-CCTCCTTCA 82
||||||||||||||| |||||| | ||| | |||||||||||||| || ||| ||||
Sbjct 1 ATGTTTCCGCAATTGTCACTAATTTTTCTTTTCTCTCTCGTTGTAATCCACCCT-TTTCA 59
Query 83 TGTCTTGGCCAAAAAATGGTGTGTGTCAGCGGCATCTGC-GCCAGATACACAACTACAAC 141
||||| |||||| | |||||||||| || |||| || || || | || ||| ||
Sbjct 60 TGTCTCGGCCAAGACATGGTGTGTGGCAAATACATCGGCGGCAAG-T--AC-ACT---AC 112
Query 142 TACAAGCTAATATTGATTGGGCATGTAGC-ATAGGAAAAGTTGACTATGTAAAAATCAAT 200
|||||||||||||||||||||||||||| | |||||||||||| | ||||| ||||||
Sbjct 113 TACAAGCTAATATTGATTGGGCATGTAGTGA-AGGAAAAGTTGATTGTGTAATGATCAAT 171
Query 201 C-TAGGTGGAGATTGCTATGAACCAAATACTCCTACTAGTCATGCATCATTTGTGATGAA 259
| | |||||| ||||| ||| ||| ||||| || |||||||||||| |||||||||||
Sbjct 172 CCT-GGTGGACCTTGCTTTGATCCAGATACTGTTATTAGTCATGCATCGTTTGTGATGAA 230
Query 260 TGATTACTACCAGAAC-CACGGAAACACTGAAGAGACATGTGATTTCAATCATACTGGTC 318
||||| ||| |||| ||||| | |||||||||| ||| |||| | | ||| ||||
Sbjct 231 TGATTTCTAT-AGAAATCACGGGAGCACTGAAGAG---TGTAATTTTAGTGGTACCGGTC 286
Query 319 AAATAATTGGTGCTGATCCAAGTTATCGTCGTTGTAG-GTATACGTAG 365
|| | || | ||||||||||||| || ||||| | ||||||||||
Sbjct 287 AAGTCGTTACTTTTGATCCAAGTTATGGTGGTTGT-GTGTATACGTAG 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18146657389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5