BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925897

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G66820.1 | Symbols:  | glycine-rich protein | chr1:24930040-...   514    2e-145


> AT1G66820.1 | Symbols:  | glycine-rich protein | chr1:24930040-24930551 
FORWARD LENGTH=512
Length=512

 Score =  514 bits (278),  Expect = 2e-145
 Identities = 339/368 (92%), Gaps = 6/368 (2%)
 Strand=Plus/Plus

Query  8    CAATTCACAAAACC-ATGGCATCAAATAACAAACTTTGGAGCCGTAAACCAGATGTCAAA  66
            ||| |||||||||| |||| ||||| ||| ||||| ||||||||||||||||| ||||||
Sbjct  40   CAA-TCACAAAACCAATGGGATCAACTAATAAACTCTGGAGCCGTAAACCAGACGTCAAA  98

Query  67   ACCGGGAAATCCGAATTTCCGGTTACCAGATTTCTCCGGACACAAATCGATAACATCAAG  126
            ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  99   ACCGGGAAATCAGAATTTCCGGTTACCAGATTCCTCCGTACACAAATCGATAACATCAAG  158

Query  127  AAC-ACAACCGCCGGTCCTGGAATCGGCGGCGGCATTGGCTGCGGCGCTGGAATCGGCAT  185
             || ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  159  -ACAACAACCGTCGGTCCCGGAATCGGCGGCGGCATTGGCTGCGGCGCTGGAATCGGCAT  217

Query  186  TGGTCTCACCGGCGGGCTCGGGATAGCTGCCTCTGAAGGT-TTGAACCATTCTAATGTGG  244
            ||||||| ||||||||||||| |||| ||||||||||||  |||| ||||||||| ||||
Sbjct  218  TGGTCTCTCCGGCGGGCTCGGAATAGGTGCCTCTGAAGGACTTGA-CCATTCTAACGTGG  276

Query  245  TTCTTGGGTTCGGTATGGGTTGCGGTATCGGGTTCGGGTTTGGATACGGGTTTGGAGTTG  304
            ||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  277  TTCTTGGATTCGGTATTGGTTGTGGTATCGGGTTCGGGTTTGGATACGGATTTGGAGTTG  336

Query  305  GCGGCGGGTACAGTTTCGATGATATTAAAGATAGATTTGACCTATGAGAAAAAGCTCCGG  364
            |||||||||||||||||||||| || ||||| ||||||||||||||| ||||||||||||
Sbjct  337  GCGGCGGGTACAGTTTCGATGACATCAAAGAGAGATTTGACCTATGAAAAAAAGCTCCGG  396

Query  365  TTCATAAT  372
            ||||||||
Sbjct  397  TTCATAAT  404



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17493176652


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5