BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925901
Length=376
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66870.1 | Symbols: | Carbohydrate-binding X8 domain superf... 501 2e-141
AT1G66852.1 | Symbols: | Carbohydrate-binding X8 domain superf... 412 9e-115
AT4G16165.1 | Symbols: | Carbohydrate-binding X8 domain superf... 331 3e-90
AT1G66855.1 | Symbols: | Carbohydrate-binding X8 domain superf... 324 4e-88
> AT1G66870.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:24945484-24946968 REVERSE LENGTH=1485
Length=1485
Score = 501 bits (271), Expect = 2e-141
Identities = 342/377 (91%), Gaps = 2/377 (1%)
Strand=Plus/Plus
Query 1 TTCACAAGTAAAACACCACAATGTTTCCGCAGTTGACACTAATCTTTCTTTTCTCTCTTG 60
||||||||||||||||||||||||||||||| |||||| | | || ||||||||||| |
Sbjct 1072 TTCACAAGTAAAACACCACAATGTTTCCGCAATTGACAGTTGTATTCCTTTTCTCTCTCG 1131
Query 61 TTGTAATCCACCCCCTTCATGTCTCAGCCAAGACATGGTGTGTGGCAAATACATCCGCAG 120
||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||| || |
Sbjct 1132 TTGTAATCCACCCTCTTCATGTCTCGGCCAAAACATGGTGTGTGGCAAATGTATCGGCGG 1191
Query 121 CACCTACACAACTACAAGCTAATATTGATTATGCATGTAGCGAAGGAAAAGTTGACTGTG 180
|| ||||||| |||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 1192 CAAGTACACAATTACAAGCTAATATTGATTGGGCATGTAGTGAAGGAAAAGTTGATTGTG 1251
Query 181 CAAAAATCAATCCCGGTGGAGT-TTGCTTTGATCCAGATACTGTTCTTAGCCATGCATCA 239
||| ||||||||| |||||| | |||||||||||| |||||| || |||| |||||||||
Sbjct 1252 CAACAATCAATCCTGGTGGA-TCTTGCTTTGATCCGGATACTCTTGTTAGTCATGCATCA 1310
Query 240 TTTGTGATGAATGATTTCTACCAGAATCATGGGAGCACTGAAGAGGCGTGTAATTTTAGT 299
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
Sbjct 1311 TTTGTGATGAATGATTTCTACCAGAATCACGGAAGCACTGAAGAGGCGTGTAATTTTACT 1370
Query 300 GGTACTGGTCAAGTCGTTACTGCTGATCCAAGTTATGGTAGTTGTGTGTATACATAGAAT 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1371 GGTACTGGTCAAGTCGTTACTGCTGATCCAAGTTATGGTAGTTGTGTGTATACATAGATT 1430
Query 360 ACATGGTTTGATGAATG 376
|||| |||| |||||||
Sbjct 1431 ACATAGTTTAATGAATG 1447
> AT1G66852.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:24938500-24938832 REVERSE LENGTH=333
Length=333
Score = 412 bits (223), Expect = 9e-115
Identities = 300/337 (89%), Gaps = 5/337 (1%)
Strand=Plus/Plus
Query 21 ATGTTTCCGCAGTTGACACTAATCTTTCTTTTCTCTCTTGTTGTAATCCACCCCCTTCAT 80
||||||||||| ||| ||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 1 ATGTTTCCGCAATTGTCACTAATTTTTCTTTTCTCTCTCGTTGTAATCCACCCTTTTCAT 60
Query 81 GTCTCAGCCAAGACATGGTGTGTGGCAAATACATCCGCAGCACCTACACAACTACAAGCT 140
||||| ||||||||||||||||||||||||||||| || ||| ||||| ||||||||||
Sbjct 61 GTCTCGGCCAAGACATGGTGTGTGGCAAATACATCGGCGGCAAGTACACTACTACAAGCT 120
Query 141 AATATTGATTATGCATGTAGCGAAGGAAAAGTTGACTGTGCAAAAATCAATCCCGGTGGA 200
|||||||||| |||||||| |||||||||||||| |||| || |||||||| ||||||
Sbjct 121 AATATTGATTGGGCATGTAGTGAAGGAAAAGTTGATTGTGTAATGATCAATCCTGGTGGA 180
Query 201 GTTTGCTTTGATCCAGATACTGTTCTTAGCCATGCATCATTTGTGATGAATGATTTCTAC 260
|||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||
Sbjct 181 CCTTGCTTTGATCCAGATACTGTTATTAGTCATGCATCGTTTGTGATGAATGATTTCTAT 240
Query 261 CAGAA-TCATGGGAGCACTGAAGAGGCGTGTAATTTTAGTGGTACTGGTCAAGTCGTTAC 319
|||| ||| ||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 241 -AGAAATCACGGGAGCACTGAAGAG---TGTAATTTTAGTGGTACCGGTCAAGTCGTTAC 296
Query 320 TGCTGATCCAAGTTATGGTAGTTGTGTGTATACATAG 356
| |||||||||||||||| ||||||||||||| |||
Sbjct 297 TTTTGATCCAAGTTATGGTGGTTGTGTGTATACGTAG 333
> AT4G16165.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr4:9164080-9164633 FORWARD LENGTH=554
Length=554
Score = 331 bits (179), Expect = 3e-90
Identities = 317/381 (83%), Gaps = 19/381 (5%)
Strand=Plus/Plus
Query 4 ACAAG-TAAAACACCACAATGTTTCCGCAGTTGACACTAATCTTT-CTTTTCTCTCTTGT 61
||||| ||||||| |||||||||||||| ||||||||||| ||| ||| |||||||
Sbjct 70 ACAAGCGAAAACACGACAATGTTTCCGCAATTGACACTAAT-TTTCCTTCTCTCTCTCAC 128
Query 62 TGTAATCCACCCCCTTCATGTCTCAGCCAAGACATGGTGTGTGGCAAATACATCCGCAGC 121
||||||| ||||| |||||||||| ||||||||||||||||| ||||| |||| || ||
Sbjct 129 TGTAATCTACCCCTTTCATGTCTCGGCCAAGACATGGTGTGTAGCAAACCCATCAGCCGC 188
Query 122 ACCTACACAACTACAAGCTAATATTGATTATGC-ATGTAG-CGAAGGAAAAGTTGACTGT 179
| ||||||| |||||||||||||||||| || |||||| | ||||||| || |||
Sbjct 189 AAGTACACAATTACAAGCTAATATTGATT-GGCTATGTAGTC-AAGGAAATCCTGGTTGT 246
Query 180 GCAAAAATCAATCCCGGTGGAGT-TTGCTTTGATCCAGATACTGTTCTTAGCCATGCATC 238
| | |||| ||| |||||| | ||||||||| ||| ||| |||| ||| |||||||||
Sbjct 247 GTATTAATCGGTCCTGGTGGA-TCTTGCTTTGAACCAAATAATGTTATTAACCATGCATC 305
Query 239 ATTTGTGATGAATGATTTCTACCAGAAT-CATGGG-AGCACTGAAGAGGCGTGTAATTTT 296
||||||||||||||||| ||||||| | || ||| ||||||||||||||||||||||||
Sbjct 306 ATTTGTGATGAATGATTACTACCAG-TTGCA-GGGAAGCACTGAAGAGGCGTGTAATTTT 363
Query 297 AGTGGTACTGGTC-AAGTCGTT-ACTGCTGATCCAAGTTATGGTAGTTGTGTGTATACAT 354
|||||| |||||| || || || | | || |||||||||||| | ||||||||||| | |
Sbjct 364 AGTGGTTCTGGTCGAA-TCATTGA-TACTAATCCAAGTTATGCTCGTTGTGTGTATTCGT 421
Query 355 AGA-A-TACATGGTTTGATGA 373
||| | |||||||||||||||
Sbjct 422 AGAGAATACATGGTTTGATGA 442
> AT1G66855.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:24939550-24940013 REVERSE LENGTH=464
Length=464
Score = 324 bits (175), Expect = 4e-88
Identities = 303/364 (83%), Gaps = 12/364 (3%)
Strand=Plus/Plus
Query 19 CAATG-TTTCCGCAGTTGACACTAATCTTTC-TTTTCTCTCTTGTTGTAATCCACCCCCT 76
||||| ||| |||| |||||||||||| ||| |||| ||||| ||||||||||| || |
Sbjct 1 CAATGATTT-CGCAATTGACACTAATC-TTCTTTTTATCTCTCGTTGTAATCCAACCTTT 58
Query 77 TCATGTCTCAGCCAAGACATGGTGTGTGGCAAATACATCCGCAG-CACCTACACAACTAC 135
|||| | | ||||||||||||||||| ||| | |||| || | || ||||||||| |
Sbjct 59 TCATATTTTGGCCAAGACATGGTGTGTAGCAGCTGCATCAGC-GACAGATACACAACTTC 117
Query 136 AAGCTAATATTGATTATGCATGTAGCGAAGGAAAAGTTGACTGTGCAAAAATCAATCCCG 195
||||||||||||||| ||||||| |||||| ||||||||||||| |||||| ||||| |
Sbjct 118 AAGCTAATATTGATTGGGCATGTAACGAAGGTAAAGTTGACTGTGTAAAAATTAATCCTG 177
Query 196 GTGGAGTTTGCTTTGATCCAGATACTGTT-CTTAGCCATGCATCATTTGTGATGAATGAT 254
|||| ||||||| ||| ||| ||||| || | ||||||||||||||||||||||||||||
Sbjct 178 GTGGCGTTTGCTATGAACCAAATACTCTTAC-TAGCCATGCATCATTTGTGATGAATGAT 236
Query 255 TTCTACCAGAATCATGGGAGCACTGAAGAGGCGTGT-AATTTTAGTGGTACTGGTCAAGT 313
| ||| | |||||||||||||| ||||||||| ||| |||| | | |||||||||| |
Sbjct 237 TACTATCGGAATCATGGGAGCATTGAAGAGGCATGTGAATTCAA-TCATACTGGTCAAAT 295
Query 314 CGTTACTGCTGATCCAAGTTATGGTAGTTGT-GTGTATACATAGAATACATGGTTTGATG 372
| ||| || ||||||||||||| || ||||| | |||| | ||||||||||| |||||||
Sbjct 296 CATTAGTGGTGATCCAAGTTATCGTCGTTGTAG-GTATTCGTAGAATACATGATTTGATG 354
Query 373 AATG 376
|||
Sbjct 355 TATG 358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17694247648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5