BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925902
Length=295
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66855.1 | Symbols: | Carbohydrate-binding X8 domain superf... 353 4e-97
AT1G66852.1 | Symbols: | Carbohydrate-binding X8 domain superf... 163 8e-40
AT2G39640.1 | Symbols: | glycosyl hydrolase family 17 protein ... 63.9 8e-10
> AT1G66855.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:24939550-24940013 REVERSE LENGTH=464
Length=464
Score = 353 bits (191), Expect = 4e-97
Identities = 247/273 (90%), Gaps = 8/273 (3%)
Strand=Plus/Plus
Query 31 CGACAGATACACAACTACAAGCTAATATTGATTGGGCATGTAACGAAGGCCAAGTCGACT 90
|||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||
Sbjct 100 CGACAGATACACAACTTCAAGCTAATATTGATTGGGCATGTAACGAAGGTAAAGTTGACT 159
Query 91 GTGCAAAAATCAATCCTGGTGGCGTATGCTATGAACCAAATACTCCTACTAGCCATGCAT 150
||| |||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 160 GTGTAAAAATTAATCCTGGTGGCGTTTGCTATGAACCAAATACTCTTACTAGCCATGCAT 219
Query 151 CATTTGTGATGAACGATTACTATCGGAGTCACGGAAGCACTGAAGAGGCATGTGATTTCA 210
||||||||||||| ||||||||||||| ||| || |||| ||||||||||||||| ||||
Sbjct 220 CATTTGTGATGAATGATTACTATCGGAATCATGGGAGCATTGAAGAGGCATGTGAATTCA 279
Query 211 ATCATACTGGTCAAATTATTAGTGGTGATCCAAGTTATCGTCGTTGTAGGTAT--G-A-- 265
|||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 280 ATCATACTGGTCAAATCATTAGTGGTGATCCAAGTTATCGTCGTTGTAGGTATTCGTAGA 339
Query 266 ---CGTGGTTTGACGTATGATTTTGTGATTGGA 295
| || ||||| |||||||||||||||||||
Sbjct 340 ATACATGATTTGATGTATGATTTTGTGATTGGA 372
> AT1G66852.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:24938500-24938832 REVERSE LENGTH=333
Length=333
Score = 163 bits (88), Expect = 8e-40
Identities = 186/233 (80%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 38 TACACAACTACAAGCTAATATTGATTGGGCATGTAACGAAGGCCAAGTCGACTGTGCAAA 97
||||| ||||||||||||||||||||||||||||| ||||| |||| || |||| ||
Sbjct 105 TACACTACTACAAGCTAATATTGATTGGGCATGTAGTGAAGGAAAAGTTGATTGTGTAAT 164
Query 98 AATCAATCCTGGTGG-CGTATGCTATGAACCAAATACTCCTACTAGCCATGCATCATTTG 156
|||||||||||||| | | |||| ||| ||| ||||| || ||| |||||||| ||||
Sbjct 165 GATCAATCCTGGTGGACCT-TGCTTTGATCCAGATACTGTTATTAGTCATGCATCGTTTG 223
Query 157 TGATGAACGATTACTATCGGAGTCACGGAAGCACTGAAGAGGCATGTGATTTCAATCATA 216
||||||| |||| |||| | | |||||| |||||||||||| ||| |||| | | ||
Sbjct 224 TGATGAATGATTTCTATAGAAATCACGGGAGCACTGAAGAG---TGTAATTTTAGTGGTA 280
Query 217 CTGGTCAAATTATTAGTGGTGATCCAAGTTATCGTCGTTGTAG-GTATGACGT 268
| |||||| | ||| | ||||||||||||| || ||||| | |||| ||||
Sbjct 281 CCGGTCAAGTCGTTACTTTTGATCCAAGTTATGGTGGTTGT-GTGTAT-ACGT 331
> AT2G39640.1 | Symbols: | glycosyl hydrolase family 17 protein
| chr2:16525086-16527012 REVERSE LENGTH=1735
Length=1735
Score = 63.9 bits (34), Expect = 8e-10
Identities = 44/49 (90%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 31 CGACAGATACACAACTACAAGCTAATATTGATTGGGCATGTAACGAAGG 79
||||||| |||||||||||||||||||||||||||| |||| | ||||
Sbjct 1400 CGACAGAGACACAACTACAAGCTAATATTGATTGGGTGTGTAGCCAAGG 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13622559979
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5