BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925906
Length=376
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66870.1 | Symbols: | Carbohydrate-binding X8 domain superf... 490 4e-138
AT1G66852.1 | Symbols: | Carbohydrate-binding X8 domain superf... 424 4e-118
AT4G16165.1 | Symbols: | Carbohydrate-binding X8 domain superf... 342 1e-93
> AT1G66870.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:24945484-24946968 REVERSE LENGTH=1485
Length=1485
Score = 490 bits (265), Expect = 4e-138
Identities = 341/378 (90%), Gaps = 4/378 (1%)
Strand=Plus/Plus
Query 1 TTCACAAGTAAAACACCACAATGTTTCCGCAATTGACACTAATCTTTCTTTTCTCTCTTG 60
|||||||||||||||||||||||||||||||||||||| | | || ||||||||||| |
Sbjct 1072 TTCACAAGTAAAACACCACAATGTTTCCGCAATTGACAGTTGTATTCCTTTTCTCTCTCG 1131
Query 61 TTGTAATCCACCCCCTTCATGTCTCAGCCAAGACATGGTGTGTGGCAAATACATCTGCAG 120
||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||| || |
Sbjct 1132 TTGTAATCCACCCTCTTCATGTCTCGGCCAAAACATGGTGTGTGGCAAATGTATCGGCGG 1191
Query 121 CACCTACACAACTACAAGCTAATATTGATTATGCATGTAGCGAAGGAAAAGTTGATTGTG 180
|| ||||||| |||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1192 CAAGTACACAATTACAAGCTAATATTGATTGGGCATGTAGTGAAGGAAAAGTTGATTGTG 1251
Query 181 TAAAAATCAATCCCGGTGGAGT-TTGCTTTGATCCAGATACTGTTCTTAG-CTATGCATC 238
|| ||||||||| |||||| | |||||||||||| |||||| || |||| | |||||||
Sbjct 1252 CAACAATCAATCCTGGTGGA-TCTTGCTTTGATCCGGATACTCTTGTTAGTC-ATGCATC 1309
Query 239 ATTTGTGATGAATGATTTCTACCAGAATCATGGGAGCACTGAAGAGGCGTGTAATTTTAG 298
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1310 ATTTGTGATGAATGATTTCTACCAGAATCACGGAAGCACTGAAGAGGCGTGTAATTTTAC 1369
Query 299 TGGTACTGGTCAAATCGTTACTGTTGATCCAAGTTATGGTAGTTGTGTGTATACATAGAA 358
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1370 TGGTACTGGTCAAGTCGTTACTGCTGATCCAAGTTATGGTAGTTGTGTGTATACATAGAT 1429
Query 359 TACATGGTTTGATGAATG 376
||||| |||| |||||||
Sbjct 1430 TACATAGTTTAATGAATG 1447
> AT1G66852.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:24938500-24938832 REVERSE LENGTH=333
Length=333
Score = 424 bits (229), Expect = 4e-118
Identities = 303/338 (90%), Gaps = 7/338 (2%)
Strand=Plus/Plus
Query 21 ATGTTTCCGCAATTGACACTAATCTTTCTTTTCTCTCTTGTTGTAATCCACCCCCTTCAT 80
||||||||||||||| ||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 1 ATGTTTCCGCAATTGTCACTAATTTTTCTTTTCTCTCTCGTTGTAATCCACCCTTTTCAT 60
Query 81 GTCTCAGCCAAGACATGGTGTGTGGCAAATACATCTGCAGCACCTACACAACTACAAGCT 140
||||| ||||||||||||||||||||||||||||| || ||| ||||| ||||||||||
Sbjct 61 GTCTCGGCCAAGACATGGTGTGTGGCAAATACATCGGCGGCAAGTACACTACTACAAGCT 120
Query 141 AATATTGATTATGCATGTAGCGAAGGAAAAGTTGATTGTGTAAAAATCAATCCCGGTGGA 200
|||||||||| |||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct 121 AATATTGATTGGGCATGTAGTGAAGGAAAAGTTGATTGTGTAATGATCAATCCTGGTGGA 180
Query 201 GTTTGCTTTGATCCAGATACTGTTCTTAG-CTATGCATCATTTGTGATGAATGATTTCTA 259
|||||||||||||||||||||| |||| | ||||||| ||||||||||||||||||||
Sbjct 181 CCTTGCTTTGATCCAGATACTGTTATTAGTC-ATGCATCGTTTGTGATGAATGATTTCTA 239
Query 260 CCAGAA-TCATGGGAGCACTGAAGAGGCGTGTAATTTTAGTGGTACTGGTCAAATCGTTA 318
|||| ||| ||||||||||||||| ||||||||||||||||| |||||| ||||||
Sbjct 240 T-AGAAATCACGGGAGCACTGAAGAG---TGTAATTTTAGTGGTACCGGTCAAGTCGTTA 295
Query 319 CTGTTGATCCAAGTTATGGTAGTTGTGTGTATACATAG 356
|| ||||||||||||||||| ||||||||||||| |||
Sbjct 296 CTTTTGATCCAAGTTATGGTGGTTGTGTGTATACGTAG 333
> AT4G16165.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr4:9164080-9164633 FORWARD LENGTH=554
Length=554
Score = 342 bits (185), Expect = 1e-93
Identities = 318/380 (84%), Gaps = 17/380 (4%)
Strand=Plus/Plus
Query 4 ACAAG-TAAAACACCACAATGTTTCCGCAATTGACACTAATCTTT-CTTTTCTCTCTTGT 61
||||| ||||||| |||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 70 ACAAGCGAAAACACGACAATGTTTCCGCAATTGACACTAAT-TTTCCTTCTCTCTCTCAC 128
Query 62 TGTAATCCACCCCCTTCATGTCTCAGCCAAGACATGGTGTGTGGCAAATACATCTGCAGC 121
||||||| ||||| |||||||||| ||||||||||||||||| ||||| |||| || ||
Sbjct 129 TGTAATCTACCCCTTTCATGTCTCGGCCAAGACATGGTGTGTAGCAAACCCATCAGCCGC 188
Query 122 ACCTACACAACTACAAGCTAATATTGATTATGC-ATGTAG-CGAAGGAAAAGTTGATTGT 179
| ||||||| |||||||||||||||||| || |||||| | ||||||| || ||||
Sbjct 189 AAGTACACAATTACAAGCTAATATTGATT-GGCTATGTAGTC-AAGGAAATCCTGGTTGT 246
Query 180 GTAAAAATCAATCCCGGTGGAGT-TTGCTTTGATCCAGATACTGTTCTTAGCTATGCATC 238
||| |||| ||| |||||| | ||||||||| ||| ||| |||| ||| | |||||||
Sbjct 247 GTATTAATCGGTCCTGGTGGA-TCTTGCTTTGAACCAAATAATGTTATTAACCATGCATC 305
Query 239 ATTTGTGATGAATGATTTCTACCAGAAT-CATGGG-AGCACTGAAGAGGCGTGTAATTTT 296
||||||||||||||||| ||||||| | || ||| ||||||||||||||||||||||||
Sbjct 306 ATTTGTGATGAATGATTACTACCAG-TTGCA-GGGAAGCACTGAAGAGGCGTGTAATTTT 363
Query 297 AGTGGTACTGGTCAAATCGTT-ACTGTTGATCCAAGTTATGGTAGTTGTGTGTATACATA 355
|||||| |||||| |||| || | | | |||||||||||| | ||||||||||| | ||
Sbjct 364 AGTGGTTCTGGTCGAATCATTGA-TACTAATCCAAGTTATGCTCGTTGTGTGTATTCGTA 422
Query 356 GA-A-TACATGGTTTGATGA 373
|| | |||||||||||||||
Sbjct 423 GAGAATACATGGTTTGATGA 442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17694247648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5