BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925909
Length=2310
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66880.1 | Symbols: | Protein kinase superfamily protein | ... 1271 0.0
AT1G66910.1 | Symbols: | Protein kinase superfamily protein | ... 344 2e-93
> AT1G66880.1 | Symbols: | Protein kinase superfamily protein
| chr1:24946928-24955611 FORWARD LENGTH=4064
Length=4064
Score = 1271 bits (688), Expect = 0.0
Identities = 913/1018 (90%), Gaps = 30/1018 (3%)
Strand=Plus/Plus
Query 767 GATGAGACTGATGATAGA-AGAAATTACTATGTGACGAGAAACCTCTTGTCCCCTGTACT 825
||||| | ||||||| || |||| ||||||||||||||||||||||| || ||| ||
Sbjct 2248 GATGATAGTGATGAT-GATAGAAGTTACTATGTGACGAGAAACCTCTCGTTTCCTCCAC- 2305
Query 826 TCAAGGGATCAGTAATG--C-TTTAAACGACTTCAG-GAGATTTTGCAG-TAGAAACGTT 880
|| || || | ||||| | |||| |||||||||| | || |||| | |||||||||
Sbjct 2306 TC-AGTGA-GATTAATGACCTTTTATACGACTTCAGTCA-ATCTTGC-GATAGAAACGTC 2361
Query 881 AGTATTCCCGCATCTATAACCG-CGCTGAGCATGCTAG-AGAGCACTCCAAGT-ACAGAT 937
||||||||||||||| | || |||| | ||| || | |||||||||| ||| || |||
Sbjct 2362 AGTATTCCCGCATCT-GGATCGACGCTTAACATACT-GCAGAGCACTCCGAGTAAC-GAT 2418
Query 938 AATCTAAAGAAGGCACTTGAAGATGGTTTCGAGCTTCAAGTTAACTC-AGATTGTCGGAC 996
|||||||||||||| || ||| | |||||||||||| || ||||| | ||||||||||||
Sbjct 2419 AATCTAAAGAAGGCTCTCGAATACGGTTTCGAGCTTGAACTTAAC-CAAGATTGTCGGAC 2477
Query 997 GTGCATAGACTCTAAGGGTGCTTGTGGATTTAGTCAAACCTCAAGTAAATTCGAATGCTA 1056
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 2478 GTGCATAGACTCTAAGGGTGCTTGTGGATATAGTCAAACCTCAAGTAGATTCGTCTGCTA 2537
Query 1057 TTATATAGAAAAGCCACAAA-CCC--CTCAAGTAGATTCGTCTGCTAGAAACAAGGATA- 1112
|| ||||||| ||||||||| ||| ||| | | | | || |||||||||||||||
Sbjct 2538 TTCTATAGAAGAGCCACAAACCCCTACTCCACCA-A-AC-CCTACTAGAAACAAGGATAC 2594
Query 1113 AAGGCCTCTCTAAAGGAGCAAAAGCAGGCATTGCTGTTGCTTCTGTATCGGGTTTGGCCA 1172
|| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2595 AA-GCCTCTCTATTGGAGCAAAAGCAGGCATTGCGGTTGCTTCTGTATCGGGTTTGGCCA 2653
Query 1173 TTCTTATACTCGCAGGTGTGTTCTTATGCATCAGACGGAGAAGGAAGACTCAAGACGCTG 1232
||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 2654 TTCTTCTACTCGCAGGTTTGTTCTTATGCATCAGACGGAGAAGGAAGACTCAGGACGCTC 2713
Query 1233 AATACTCAAACAAAAGCTTGCCCATAACATCATATTCGAGTAGAGAAACATCAAGAAATC 1292
||||| ||| |||||||||||| || |||||||| ||||||||||| |||||||||||||
Sbjct 2714 AATACACAAGCAAAAGCTTGCCTATCACATCATACTCGAGTAGAGATACATCAAGAAATC 2773
Query 1293 CAACTTCCACAACAATCTCCTACAGTAGCAACCACTCTTTTCTTCCCTCAATCTCTAACC 1352
||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||
Sbjct 2774 CAACTTCCACAACAATCTCCTCCAGTAGCAATCACTCTCTTCTTCCCTCAATCTCTAACC 2833
Query 1353 TCGCAAACGGAAGCGACTACTATGGTGTTCAGGTCTTCAGCTATGAAGAACTTGAAGAAG 1412
| |||||| |||||||||||| ||| || || ||||| ||||||||||||||||||||||
Sbjct 2834 TTGCAAACCGAAGCGACTACTGTGGAGTCCAAGTCTTTAGCTATGAAGAACTTGAAGAAG 2893
Query 1413 CAACTGAGAATTTCTCTAGAGAACTCGGAGATGGCGGCTTCGGTACTGTCTACTACGGCG 1472
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 2894 CAACTGAGAATTTCTCTAGAGAACTCGGGGATGGTGGCTTCGGTACTGTCTACTACGGCG 2953
Query 1473 TGTTGAAAGATGGACGAGCTGTAGCAGTGAAACGACTCTACGAAAGATCACTAAAACGCG 1532
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2954 TGTTGAAAGACGGACGAGCTGTAGCAGTGAAACGACTCTACGAAAGATCACTAAAACGCG 3013
Query 1533 TAGAACAATTCAAGAACGAAATCGAAATCTTGAAGTCCCTAAAACATCCGAATCTCGTGA 1592
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 3014 TAGAACAATTCAAGAACGAAATCGAAATCTTGAAATCACTAAAACATCCGAACCTCGTGA 3073
Query 1593 TCCTCTACGGATGCACATCAAGACACAGCAGAGAGCTAT-TACTCGTCTACGAGTACATC 1651
||||||||||||||||||||||||||||||||||||| | |||| |||||||| ||||||
Sbjct 3074 TCCTCTACGGATGCACATCAAGACACAGCAGAGAGCT-TCTACTAGTCTACGAATACATC 3132
Query 1652 TCAAACGGAACTCTAGCCGAACATCTCCACGGCAACCGCGCAGAAGCTCGTCCTCTTTGC 1711
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 3133 TCAAACGGAACTCTAGCCGAACATCTACACGGCAACCGCGCAGAAGCTCGTCCTCTCTGC 3192
Query 1712 TGGTCAACCCGATTAAACATCGCAATCGAAACCGCAAGTGCATTATCCTTCCTCCACA 1769
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 3193 TGGTCAACCCGATTAAACATCGCAATCGAAACCGCAAGCGCATTATCATTCCTCCACA 3250
Score = 850 bits (460), Expect = 0.0
Identities = 574/629 (91%), Gaps = 8/629 (1%)
Strand=Plus/Plus
Query 125 GCTCAGTTTCAGTGTGGGGACATAACGGCTGGTTTCCCCTTCTCCGGTGGGAGTCGTCCC 184
||| |||||||||||||| |||| || ||||||||||| ||||||||||||| ||||||
Sbjct 1240 GCTAAGTTTCAGTGTGGGAACATCACCGCTGGTTTCCCTTTCTCCGGTGGGAATCGTCCT 1299
Query 185 CAAATTTGCGGTCATCCATCGCTGGTGCTTCACTGCTTTAACAACAAGACCTCTATAATC 244
||||||||||||||||||||| ||| ||||||||||| |||||||| | |||||||||||
Sbjct 1300 CAAATTTGCGGTCATCCATCGTTGGAGCTTCACTGCTATAACAACATGGCCTCTATAATC 1359
Query 245 ATCTCAGACCATTTTTACAATGTTCTCCATATAGATCAAACATCTAACACTCTTAGACTC 304
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 ATCTCAGACCACTTTTACAATGTTCTCCATATAGATCAAACATCTAACACTCTTAGACTT 1419
Query 305 GCTAGAGCAGAGCTTGAAGGTTCTTTTTGCAACGCTACTTACACAGCCACAACCTTGCCT 364
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 GCTAGAGCAGAGCTGGAAGGTTCTTTTTGCAACGCTACTTACACAGCCACAACCTTGCCT 1479
Query 365 TCCGATATTTTTGAGCTTTCGTCGACCTACACGAGCCTCACTGTTTTCTACCTCTGCGAT 424
||| | || |||||| |||| || ||||||| |||||||||||||||||||||||||||
Sbjct 1480 TCCAAAATCTTTGAGATTTCATCAACCTACAAGAGCCTCACTGTTTTCTACCTCTGCGAC 1539
Query 425 CCTAAGCTTTCTTACCGTTCAAGTTATACATGTCCTGGTAGAGGCCTTATCTCAGTGTCT 484
|||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1540 CCTAAGGTTTCTTACCGTTCGAGTTATACATGTCCTGGTAGAGGCCTTGTCTCAGTGTCT 1599
Query 485 CAAAAC-CTTGATTACAAGTAT-TCCTGCCAAGACAGTTTCACAATTAACGTTCCAAAGA 542
||||| || |||||| | || |||||||||||||||||||| ||||||||||||||||
Sbjct 1600 CAAAATTCT-GATTACCA-TAACTCCTGCCAAGACAGTTTCACGATTAACGTTCCAAAGA 1657
Query 543 GCTTTGTTCCAGAAGAGAAAGAGTTGAATTTGAGAAAATTGGAAAAG-GCTTTACA-AGA 600
|||||||||||||||||||||||||| || ||| || ||||||| | |||||| | |||
Sbjct 1658 GCTTTGTTCCAGAAGAGAAAGAGTTGGATGTGACCAATTTGGAAA-GTGCTTTA-AGAGA 1715
Query 601 AGGGTTTGAAGTGAAGGTGAAGATTGATGAGAAAGCTTGTCAAAAATGTTCATCCTCTGG 660
||| ||||| |||||||| ||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 1716 AGGATTTGAGGTGAAGGTAAAGGTTGATGAGAAAACTTGTCAAAAATGTACATCCTCTGG 1775
Query 661 TGGAATCTGCGGCTTCGAAAATTCAACACAGATTTGCTGCAAGCAAGCCTCATCATCAGG 720
||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1776 TGGAACCTGCGGCTTCCAAAATTCAACACAGATTTGCTGCAAGGAAGCCTCATCATTAGG 1835
Query 721 ATGCAATAAACTCCATCCACTACTTGATG 749
|||||||||| |||||||||||| |||||
Sbjct 1836 ATGCAATAAAGTCCATCCACTACCTGATG 1864
Score = 784 bits (424), Expect = 0.0
Identities = 493/526 (94%), Gaps = 6/526 (1%)
Strand=Plus/Plus
Query 1775 GCACCACAAGGCACACCAGGCTACGTAGATCCAGAGTATTACCAATGTTA-CAGTTTAAA 1833
|||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 3376 GCACCACAAGGCACACCAGGCTACGTGGATCCAGAGTATTACCAATGTTACCA-ATTAAA 3434
Query 1834 CGAGAAAAGTGACGTCTATAGCTTCGGAGTCGTACTAAGC-GAACTAATCTCATCAAAAG 1892
|||||| || || ||||| ||||||||||||||||||| | |||||||||||||||||||
Sbjct 3435 CGAGAAGAGCGATGTCTACAGCTTCGGAGTCGTACTAA-CGGAACTAATCTCATCAAAAG 3493
Query 1893 AAGCAGTAGACATCACTCGTCACCGTCACGATATCAACCTAGCGAACATGGCTGTATCCA 1952
||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 3494 AAGCAGTAGACATTACTCGACACCGTCACGATATCAATCTAGCGAACATGGCTGTATCTA 3553
Query 1953 AAATCCAGAACAACGCATTACACGAGCTTGTAGATTCGAGTTTAGGATTCGATGATGATC 2012
| || |||||||| ||||||||||||||||| |||||||||||||||| |||| ||||||
Sbjct 3554 AGATTCAGAACAATGCATTACACGAGCTTGTGGATTCGAGTTTAGGATACGATAATGATC 3613
Query 2013 CAGAAGTTAGGAGGAAGATGATATCGGTGGCGGAATTAGCGTTTCGATGTTTGCAACAAG 2072
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3614 CTGAAGTTAGGAGGAAGATGATGGCGGTGGCGGAATTAGCGTTTCGATGTTTGCAACAAG 3673
Query 2073 AGAGAGAAGTTAGACCTTCGATGGATGAGATTGTGGAGATTTTGAGAGAGG-TTAAGGAG 2131
||||||| |||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 3674 AGAGAGATGTTAGACCGGCGATGGATGAGATTGTGGAGATTTTGAGAG-GGATTAAGGAT 3732
Query 2132 GAAGAGGAGAAGCGTGTGTTGGTGAAGTCGCCGGATGTTGTGGATATTGAATGTGGTGGT 2191
|| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3733 GATGAGAAGAAGCGTGTGTTGGTGAAGTCGCCGGATGTTGTGGATATTGAATGCGGTGGT 3792
Query 2192 GGTGATGATGTTGGATTGTTGAGGAATAGTGTTCCGCCGCCGATTTCGCCGGAGACTGAT 2251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3793 GGTGATGATGTTGGATTGTTGAGGAATAGTGTTCCGCCGCCGATTTCGCCGGAGACTGAT 3852
Query 2252 AAGTGGACGAGTAGTTCTGATACGGCGGCGAGTTTGTAATTAGGGT 2297
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3853 AAGTGGACTAGTAGTTCTGATACGGCGGCGAGTTTGTAATTAGGGT 3898
> AT1G66910.1 | Symbols: | Protein kinase superfamily protein
| chr1:24961634-24963946 REVERSE LENGTH=2006
Length=2006
Score = 344 bits (186), Expect = 2e-93
Identities = 295/345 (86%), Gaps = 18/345 (5%)
Strand=Plus/Plus
Query 752 CTTGATTGTCCAGATGATGAGACTGATGATAGAAGAAATTACTATGTGACGAGAAACCT- 810
||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||
Sbjct 462 CTTGATTGTCCAGATGATGGGACTGATGATAGAAGAAATTATTATCTGACGAGAAACCTC 521
Query 811 -C-TT--GTCC-CC-T---GT--ACTTCAAGGG-ATCAGTAATGC-TTTAAACGACTTCA 857
| || ||| || | | |||| ||||| || ||| | | ||||||||||||
Sbjct 522 ACGTTCCTTCCGCCGTCCCTTAAACTTGAAGGGAAT-AGT-TTCCTTTTAAACGACTTTG 579
Query 858 GGAGATTTTGCAGTAGAAACGTTAGTATTCCCGCATCTATAACCGCGCTGAGCATGCTAG 917
|| ||| ||||||||||||||| |||| |||||| |||| ||||||||||| || || |
Sbjct 580 GGGGATCTTGCAGTAGAAACGTCAGTAATCCCGCTTCTAGAACCGCGCTGAACACACTGG 639
Query 918 AGAGCACTCCAAGTACAGATAATCTAAAGAAGGCACTTGAAGATGGTTTCGAGCTTCAAG 977
|||| ||||||||||||||||||||||||| ||||||||||||||||||| |||| |||
Sbjct 640 AGAGTACTCCAAGTACAGATAATCTAAAGATTGCACTTGAAGATGGTTTCGCGCTTGAAG 699
Query 978 TTAACTCAGATTGTCGGACGTGCATAGACTCTAAGGGTGCTTGTGGATTTAGTCAAACCT 1037
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 TTAACTCAGATTGCCGGACGTGCATAGACTCTAAGGGTGCTTGTGGATTTAGTCAAACCT 759
Query 1038 CAAGTAAATTCGAATGCTATTATATAGAAA-AGCCACAAACCCCT 1081
|||||| ||||| |||||||||| | || ||||||||| ||||
Sbjct 760 CAAGTAGATTCGTCTGCTATTATAG-GCAAGAGCCACAAAACCCT 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114658044780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5