BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925923

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36380.1 | Symbols: PDR6, ATPDR6 | pleiotropic drug resistan...   117    6e-26


> AT2G36380.1 | Symbols: PDR6, ATPDR6 | pleiotropic drug resistance 
6 | chr2:15257583-15263766 FORWARD LENGTH=4501
Length=4501

 Score =  117 bits (63),  Expect = 6e-26
 Identities = 87/99 (88%), Gaps = 0/99 (0%)
 Strand=Plus/Plus

Query  12    AAACTAGAGATGTCTTCAGTACAACGCCATCCGGTTTCGCATGATAGTAGTCATTGGTGT  71
             ||||| ||||| || ||||||||| ||||| ||||||| ||||| |||||||||||||||
Sbjct  3567  AAACTGGAGATATCCTCAGTACAATGCCATTCGGTTTCTCATGACAGTAGTCATTGGTGT  3626

Query  72    CTTGTTTGGTCTAATTTTCTTACAAATAGGAACAAAAAT  110
             ||||||||||||| ||||||  |||| |||||| |||||
Sbjct  3627  CTTGTTTGGTCTACTTTTCTGGCAAACAGGAACTAAAAT  3665



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12868543744


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5