BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925925
Length=790
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67000.1 | Symbols: | Protein kinase superfamily protein | ... 435 4e-121
> AT1G67000.1 | Symbols: | Protein kinase superfamily protein
| chr1:25004109-25007647 REVERSE LENGTH=2830
Length=2830
Score = 435 bits (235), Expect = 4e-121
Identities = 531/668 (79%), Gaps = 43/668 (6%)
Strand=Plus/Plus
Query 12 AAACAAACCATGTACTATC--TCCC-CACTTCTT-GTCTGGTCTTGTTCTTCCTCGCCTT 67
||||||| ||||||||| | |||| || ||||| || | |||||||||||||| ||
Sbjct 35 AAACAAATCATGTACTACCATTCCCTCAGTTCTTATTC-GATCTTGTTCTTCCTCTTCTC 93
Query 68 CTTATTCCACCATCTTCCTTGTGCTTCAAGTAAA-AAGGAACTTGGGGGGTGTGAGACTC 126
| ||||||||||||||||||||||||||||||| ||||| |||||| |||||||| |||
Sbjct 94 CCTATTCCACCATCTTCCTTGTGCTTCAAGTAACCAAGGA-CTTGGGTGGTGTGAGTCTC 152
Query 127 TGTTCCAGTGTGGGAACGTCACCGCTGGTTTCCC-TTTCTCGGGTCAG-AATCGTCACAA 184
|||| |||||||||||| ||||||||| |||||| ||| | ||| | | |||||||||||
Sbjct 153 TGTTTCAGTGTGGGAACATCACCGCTGATTTCCCCTTT-TGGGG-CGGGAATCGTCACAA 210
Query 185 ACTTTGCGGTCATCCATTTCTCGAGCTTTACTGCGTCAATAACA-T--CACCACTTTATT 241
|| |||||||||||| || || |||||| ||||| |||||||| | |||| ||||||
Sbjct 211 ACCTTGCGGTCATCCGTTGCTGGAGCTTCACTGCAACAATAACAATATCACCTCTTTATA 270
Query 242 CATCTCAAATAAAGAGTTCCATGTTC-TAAAAATAAACCAAACATCTAACACTATTACAC 300
|||||||||| |||||||| |||||| | | | |||| ||||||||||||||| |||| |
Sbjct 271 CATCTCAAATCAAGAGTTCTATGTTCGTCAGA-TAAATCAAACATCTAACACTCTTACGC 329
Query 301 TTGCTAGATTTGACCTTTTAGGTTCCTTTTGCTCCTC-TA--CATT---TACCAACGTAA 354
|||| |||| |||||| ||||||| ||||||||||| || ||| ||||| | ||
Sbjct 330 TTGCCAGATCAGACCTTCTAGGTTCTTTTTGCTCCTCCTATGCATACAATACCA-C--AA 386
Query 355 CCTTACCTCCAGAAGT-TTTCGAAATTTCACCAACCTACAAGAGCGTCACTGTCTTCCAC 413
|||| ||||| ||| | ||| || |||| ||||| ||||||||| | || || || ||
Sbjct 387 CCTTGCCTCCCGAAATCTTT-GAGCTTTCCCCAACTTACAAGAGCCTAACCGTATTGTAC 445
Query 414 CTAT-GTGACCCTTGG-TTTCCATACCATTCGAGTTATAAATGTCCTGAGATAGGT-CTT 470
| || |||| || | |||| |||| |||||||||| |||||||| ||||| |||
Sbjct 446 C-ATTGTGATCCAAAGCTTTCT-TACCGCTCGAGTTATACATGTCCTGCTCTAGGTACTT 503
Query 471 ATCTCAATGTCTGAAAACCTTGA--ACATAATAACAACT-GCCGTGAGAGTTTCACTGTG 527
| ||||||||| ||| | |||| || |||| || ||| | |||||||| ||
Sbjct 504 TT-TCAATGTCTCAAAGCGTTGATTACC-AATATT--CTTGCCAAAACAGTTTCACAGTT 559
Query 528 AACCTTCCTACAAGTTTTGTTCCAGAAGAGGGAGTGTTGAATTTGAC-ACATTTGGAAAG 586
||| |||| || ||||| |||||||||| ||| |||||||||||| | ||||||||||
Sbjct 560 AACGTTCCAACGAGTTTCCATCCAGAAGAGAGAGGGTTGAATTTGACTA-ATTTGGAAAG 618
Query 587 TGCTCTAAGAGAAGGATTTGAGGTGAAGGTGAAGATTGATAAAAATGCA-TGTCAAGAAT 645
|||||||||| |||| |||||||||||| || ||||||| ||| | | |||||| |||
Sbjct 619 TGCTCTAAGAAAAGGTTTTGAGGTGAAGCTGGTGATTGATGAAA-TACCGTGTCAACAAT 677
Query 646 GTTTATCC 653
||| ||||
Sbjct 678 GTTCATCC 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38429122455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5